1. Home
  2. Species
  3. Salvinia cucullata
  4. Sequence
  5. Sacu_v1.1_s0167.g024233

Sacu_v1.1_s0167.g024233


Description : DNA repair factor *(UVSSA) & original description: CDS=1-1962


Gene families : OG0006906 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006906_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0167.g024233
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
Aop_g04794 No alias DNA repair factor *(UVSSA) & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g02734 No alias DNA repair factor *(UVSSA) & original description: none 0.04 OrthoFinder output from all 47 species
Len_g13866 No alias DNA repair factor *(UVSSA) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g096030.4.1 Solyc01g096030 DNA repair factor (UVSSA) 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0009411 response to UV IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004525 ribonuclease III activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006914 autophagy IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
BP GO:0061919 process utilizing autophagic mechanism IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
CC GO:1902554 serine/threonine protein kinase complex IEP HCCA
CC GO:1902911 protein kinase complex IEP HCCA
CC GO:1990316 Atg1/ULK1 kinase complex IEP HCCA
InterPro domains Description Start Stop
IPR018610 UVSSA 398 498
No external refs found!