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  5. Sacu_v1.1_s0132.g022179

Sacu_v1.1_s0132.g022179


Description : XRN4-exoribonuclease cofactor *(LARP1) & original description: CDS=349-2913


Gene families : OG0000608 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000608_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0132.g022179
Cluster HCCA: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
Adi_g020042 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g14335 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.03 OrthoFinder output from all 47 species
Aop_g02092 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Gb_04152 No alias La-related protein 1C OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os09g36920.1 LOC_Os09g36920 La-related protein 1B OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Lfl_g18424 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g22650 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g27980 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.02 OrthoFinder output from all 47 species
Sam_g51176 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.03 OrthoFinder output from all 47 species
Spa_g02549 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR006630 La_HTH 354 409
No external refs found!