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  5. Sacu_v1.1_s0109.g020546

Sacu_v1.1_s0109.g020546


Description : nucleoporin of nuclear pore complex *(NUP98) & original description: CDS=391-3312


Gene families : OG0001205 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001205_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0109.g020546
Cluster HCCA: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
AT1G59660 No alias Nucleoporin autopeptidase 0.02 OrthoFinder output from all 47 species
Aop_g62728 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.02 OrthoFinder output from all 47 species
Ehy_g18615 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01019716001 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.03 OrthoFinder output from all 47 species
Gb_07065 No alias NUP98 nucleoporin of nuclear pore complex 0.03 OrthoFinder output from all 47 species
MA_62342g0010 No alias NUP98 nucleoporin of nuclear pore complex 0.03 OrthoFinder output from all 47 species
Ore_g22018 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.02 OrthoFinder output from all 47 species
Pir_g12223 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.03 OrthoFinder output from all 47 species
Ppi_g03244 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.03 OrthoFinder output from all 47 species
Sam_g28559 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEA Interproscan
BP GO:0006913 nucleocytoplasmic transport IEA Interproscan
MF GO:0017056 structural constituent of nuclear pore IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004143 diacylglycerol kinase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0007186 G protein-coupled receptor signaling pathway IEP HCCA
BP GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
InterPro domains Description Start Stop
IPR007230 Nup98_auto-Pept-S59_dom 824 969
No external refs found!