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  5. Sacu_v1.1_s0087.g018459

Sacu_v1.1_s0087.g018459


Description : XRN4-exoribonuclease cofactor *(LARP1) & original description: CDS=151-3330


Gene families : OG0000608 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000608_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0087.g018459

Target Alias Description ECC score Gene Family Method Actions
Ala_g04484 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g02092 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Cba_g74969 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g30707 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07864 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.03 OrthoFinder output from all 47 species
Ore_g37534 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc04g081820.3.1 Solyc04g081820 La-related protein 1C OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Tin_g46280 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e010261_P001 Zm00001e010261 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e025537_P001 Zm00001e025537 XRN4-exoribonuclease cofactor (LARP1) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000428 DNA-directed RNA polymerase complex IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
MF GO:0004497 monooxygenase activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
CC GO:0005666 RNA polymerase III complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006383 transcription by RNA polymerase III IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0020037 heme binding IEP HCCA
CC GO:0030880 RNA polymerase complex IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR006630 La_HTH 406 462
No external refs found!