1. Home
  2. Species
  3. Salvinia cucullata
  4. Sequence
  5. Sacu_v1.1_s0072.g016917

Sacu_v1.1_s0072.g016917


Description : substrate adaptor of CUL3-based E3 ubiquitin ligase complex & original description: CDS=66-1103


Gene families : OG0000697 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000697_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0072.g016917
Cluster HCCA: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
Adi_g076354 No alias substrate adaptor of CUL3-based E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Dac_g02069 No alias substrate adaptor of CUL3-based E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
GSVIVT01008796001 No alias BTB/POZ domain-containing protein At4g08455... 0.02 OrthoFinder output from all 47 species
Nbi_g06587 No alias substrate adaptor of CUL3-based E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
CC GO:0000347 THO complex IEP HCCA
CC GO:0000445 THO complex part of transcription export complex IEP HCCA
CC GO:0000786 nucleosome IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
BP GO:0030258 lipid modification IEP HCCA
BP GO:0030259 lipid glycosylation IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 277 301
IPR002885 Pentatricopeptide_repeat 352 374
IPR002885 Pentatricopeptide_repeat 206 232
IPR002885 Pentatricopeptide_repeat 170 193
IPR002885 Pentatricopeptide_repeat 312 338
IPR000210 BTB/POZ_dom 172 271
No external refs found!