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  5. Sacu_v1.1_s0069.g016553

Sacu_v1.1_s0069.g016553


Description : rRNA methyltransferase *(NOP2) & original description: CDS=1-1836


Gene families : OG0004210 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004210_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0069.g016553

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00061p00211510 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
AT4G26600 No alias S-adenosyl-L-methionine-dependent methyltransferases... 0.03 OrthoFinder output from all 47 species
Adi_g015441 No alias rRNA methyltransferase *(NOP2) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g03273 No alias rRNA methyltransferase *(NOP2) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.38G044600.1 Ceric.38G044600 rRNA methyltransferase *(NOP2) & original description:... 0.04 OrthoFinder output from all 47 species
Cre06.g273413 OLI2 Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
Dcu_g13909 No alias rRNA methyltransferase *(NOP2) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g23563 OLI2 rRNA methyltransferase *(NOP2) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01014717001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
GSVIVT01014718001 OLI2 Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
LOC_Os09g37860.1 LOC_Os09g37860 OLI2 LSU processome maturation factor 0.03 OrthoFinder output from all 47 species
MA_10427534g0030 No alias OLI2 LSU processome maturation factor 0.03 OrthoFinder output from all 47 species
Mp6g04100.1 No alias OLI2 LSU processome maturation factor 0.03 OrthoFinder output from all 47 species
Pir_g12515 No alias rRNA methyltransferase *(NOP2) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc07g052110.4.1 Solyc07g052110 OLI2 LSU processome maturation factor 0.03 OrthoFinder output from all 47 species
Spa_g52054 No alias rRNA methyltransferase *(NOP2) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008168 methyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP HCCA
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004635 phosphoribosyl-AMP cyclohydrolase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006547 histidine metabolic process IEP HCCA
BP GO:0007059 chromosome segregation IEP HCCA
MF GO:0008199 ferric iron binding IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0019238 cyclohydrolase activity IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0030490 maturation of SSU-rRNA IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0030686 90S preribosome IEP HCCA
CC GO:0030688 preribosome, small subunit precursor IEP HCCA
CC GO:0031262 Ndc80 complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR031341 Methyltr_RsmF_N 186 273
IPR001678 MeTrfase_RsmB/NOP2 277 487
No external refs found!