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  5. Sacu_v1.1_s0068.g016386

Sacu_v1.1_s0068.g016386 (APUM8, PUM8)


Aliases : APUM8, PUM8

Description : not classified & original description: CDS=1-2142


Gene families : OG0000858 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000858_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0068.g016386

Target Alias Description ECC score Gene Family Method Actions
AT1G22240 APUM8, PUM8 pumilio 8 0.03 OrthoFinder output from all 47 species
Aob_g18418 PUM7, APUM7 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g07672 APUM12, PUM12 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_41364 APUM12, PUM12 Pumilio homolog 12 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000001 PUM7, APUM7 not classified & original description: CDS=1-2403 0.03 OrthoFinder output from all 47 species
Sam_g27114 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc04g078210.3.1 APUM12, PUM12,... Pumilio homolog 12 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006694 steroid biosynthetic process IEP HCCA
BP GO:0008202 steroid metabolic process IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 632 665
IPR001313 Pumilio_RNA-bd_rpt 522 554
IPR001313 Pumilio_RNA-bd_rpt 597 627
IPR001313 Pumilio_RNA-bd_rpt 561 590
IPR001313 Pumilio_RNA-bd_rpt 485 518
No external refs found!