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  5. Sacu_v1.1_s0059.g015180

Sacu_v1.1_s0059.g015180


Description : E3 ubiquitin ligase *(STUBL1/3) & original description: CDS=96-1763


Gene families : OG0000185 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000185_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0059.g015180
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
AT5G53060 No alias RNA-binding KH domain-containing protein 0.02 OrthoFinder output from all 47 species
Adi_g016415 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g017897 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g019265 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g022420 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g058992 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g058993 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g04660 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07063 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g21439 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g06699 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.02 OrthoFinder output from all 47 species
Aop_g04253 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene11146.t1 Aspi01Gene11146 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g03276 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07160 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07339 HEN4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g17642 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.26G008900.1 Ceric.26G008900 not classified & original description: pacid=50599495... 0.02 OrthoFinder output from all 47 species
Ceric.32G061200.1 Ceric.32G061200 not classified & original description: pacid=50597564... 0.03 OrthoFinder output from all 47 species
Cre17.g707400 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g11897 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g16018 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g07076 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g09896 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_31686 No alias RNA-binding KH domain-containing protein RCF3... 0.03 OrthoFinder output from all 47 species
Gb_38220 No alias RNA-binding KH domain-containing protein RCF3... 0.03 OrthoFinder output from all 47 species
LOC_Os03g25970.1 LOC_Os03g25970 KH domain-containing protein At4g18375 OS=Arabidopsis... 0.01 OrthoFinder output from all 47 species
Len_g07805 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g04773 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10433640g0010 No alias KH domain-containing protein At4g18375 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_3715g0020 No alias RNA-binding KH domain-containing protein RCF3... 0.02 OrthoFinder output from all 47 species
MA_6622g0010 No alias KH domain-containing protein At4g18375 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Ore_g03833 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g05810 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.03 OrthoFinder output from all 47 species
Ore_g21139 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g00616 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06368 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g16383 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g35222 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc02g067210.3.1 Solyc02g067210 KH domain-containing protein At4g18375 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc03g034200.3.1 Solyc03g034200 RNA-binding KH domain-containing protein RCF3... 0.03 OrthoFinder output from all 47 species
Solyc12g055780.3.1 Solyc12g055780 RNA-binding KH domain-containing protein RCF3... 0.03 OrthoFinder output from all 47 species
Zm00001e037033_P001 Zm00001e037033 RNA-binding KH domain-containing protein RCF3... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
MF GO:0016409 palmitoyltransferase activity IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016840 carbon-nitrogen lyase activity IEP HCCA
MF GO:0016843 amine-lyase activity IEP HCCA
MF GO:0016844 strictosidine synthase activity IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 201 267
IPR004088 KH_dom_type_1 338 385
IPR004088 KH_dom_type_1 64 115
IPR004088 KH_dom_type_1 423 489
No external refs found!