Sacu_v1.1_s0058.g014902

Description : protein involved in PS-II assembly *(Psb33) & original description: CDS=121-1080

Gene families : OG0003633 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003633_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sacu_v1.1_s0058.g014902

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00099p00029990	evm_27.TU.AmTr_v1...	Photosynthesis.photophosphorylation.photosystem...	0.05	OrthoFinder output from all 47 species
AT1G71500	No alias	Rieske (2Fe-2S) domain-containing protein	0.04	OrthoFinder output from all 47 species
Adi_g025805	No alias	protein involved in PS-II assembly *(Psb33) & original...	0.02	OrthoFinder output from all 47 species
Aev_g09772	No alias	protein involved in PS-II assembly *(Psb33) & original...	0.02	OrthoFinder output from all 47 species
Ala_g01051	No alias	protein involved in PS-II assembly *(Psb33) & original...	0.02	OrthoFinder output from all 47 species
Aob_g00988	No alias	protein involved in PS-II assembly *(Psb33) & original...	0.03	OrthoFinder output from all 47 species
Aop_g06915	No alias	protein involved in PS-II assembly *(Psb33) & original...	0.03	OrthoFinder output from all 47 species
Ceric.16G079700.1	Ceric.16G079700	protein involved in PS-II assembly *(Psb33) & original...	0.03	OrthoFinder output from all 47 species
Dac_g07653	No alias	protein involved in PS-II assembly *(Psb33) & original...	0.03	OrthoFinder output from all 47 species
Dcu_g20317	No alias	protein involved in PS-II assembly *(Psb33) & original...	0.04	OrthoFinder output from all 47 species
Dde_g09027	No alias	protein involved in PS-II assembly *(Psb33) & original...	0.03	OrthoFinder output from all 47 species
Ehy_g15961	No alias	protein involved in PS-II assembly *(Psb33) & original...	0.04	OrthoFinder output from all 47 species
Gb_17341	No alias	Psb33 protein involved in PS-II assembly	0.04	OrthoFinder output from all 47 species
Lfl_g02682	No alias	protein involved in PS-II assembly *(Psb33) & original...	0.03	OrthoFinder output from all 47 species
Nbi_g07139	No alias	protein involved in PS-II assembly *(Psb33) & original...	0.05	OrthoFinder output from all 47 species
Nbi_g08638	No alias	protein involved in PS-II assembly *(Psb33) & original...	0.03	OrthoFinder output from all 47 species
Pir_g11115	No alias	protein involved in PS-II assembly *(Psb33) & original...	0.03	OrthoFinder output from all 47 species
Pnu_g01988	No alias	protein involved in PS-II assembly *(Psb33) & original...	0.03	OrthoFinder output from all 47 species
Ppi_g01970	No alias	protein involved in PS-II assembly *(Psb33) & original...	0.04	OrthoFinder output from all 47 species
Ppi_g30084	No alias	protein involved in PS-II assembly *(Psb33) & original...	0.04	OrthoFinder output from all 47 species
Sam_g08540	No alias	protein involved in PS-II assembly *(Psb33) & original...	0.05	OrthoFinder output from all 47 species
Sam_g49855	No alias	protein involved in PS-II assembly *(Psb33) & original...	0.05	OrthoFinder output from all 47 species
Solyc11g042640.2.1	Solyc11g042640	Psb33 protein involved in PS-II assembly	0.05	OrthoFinder output from all 47 species
Spa_g09786	No alias	protein involved in PS-II assembly *(Psb33) & original...	0.04	OrthoFinder output from all 47 species
Spa_g54860	No alias	protein involved in PS-II assembly *(Psb33) & original...	0.05	OrthoFinder output from all 47 species
Zm00001e018788_P001	Zm00001e018788	Psb33 protein involved in PS-II assembly	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008942	nitrite reductase [NAD(P)H] activity	IEA	Interproscan
MF	GO:0016491	oxidoreductase activity	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016661	oxidoreductase activity, acting on other nitrogenous compounds as donors	None	Extended
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
MF	GO:0046857	oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0098809	nitrite reductase activity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003747	translation release factor activity	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
BP	GO:0006415	translational termination	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
MF	GO:0008079	translation termination factor activity	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
BP	GO:0022411	cellular component disassembly	IEP	HCCA
BP	GO:0032984	protein-containing complex disassembly	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR022796	Chloroa_b-bind	255	296
IPR012748	Rieske-like_NirD	113	225
IPR003613	Ubox_domain	6	77

External Links

No external refs found!

Sacu_v1.1_s0058.g014902

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation