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  5. Sacu_v1.1_s0051.g013913

Sacu_v1.1_s0051.g013913


Description : large subunit beta of AP-1 trans-Golgi network cargo adaptor complex & original description: CDS=88-2601


Gene families : OG0001612 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001612_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0051.g013913

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00102p00095780 evm_27.TU.AmTr_v1... Vesicle trafficking.clathrin coated vesicle (CCV)... 0.02 OrthoFinder output from all 47 species
AMTR_s00109p00033810 evm_27.TU.AmTr_v1... Vesicle trafficking.endomembrane trafficking.vacuolar... 0.03 OrthoFinder output from all 47 species
AT4G11380 No alias Adaptin family protein 0.01 OrthoFinder output from all 47 species
AT5G11490 No alias adaptin family protein 0.03 OrthoFinder output from all 47 species
Adi_g058274 No alias large subunit beta of AP-4 vacuole cargo adaptor complex... 0.02 OrthoFinder output from all 47 species
Adi_g078682 No alias large subunit beta of AP-1 trans-Golgi network cargo... 0.03 OrthoFinder output from all 47 species
Aev_g01490 No alias large subunit beta of AP-1 trans-Golgi network cargo... 0.02 OrthoFinder output from all 47 species
Ala_g15640 No alias large subunit beta of AP-4 vacuole cargo adaptor complex... 0.03 OrthoFinder output from all 47 species
Aop_g04473 No alias large subunit beta of AP-1 trans-Golgi network cargo... 0.03 OrthoFinder output from all 47 species
Ceric.13G014400.1 Ceric.13G014400 large subunit beta of AP-4 vacuole cargo adaptor complex... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020592.38 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.02 OrthoFinder output from all 47 species
Cre11.g478156 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.01 OrthoFinder output from all 47 species
Dac_g03831 No alias large subunit beta of AP-1 trans-Golgi network cargo... 0.02 OrthoFinder output from all 47 species
GSVIVT01019391001 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.03 OrthoFinder output from all 47 species
Gb_11857 No alias large subunit beta of AP-1 trans-Golgi network cargo... 0.03 OrthoFinder output from all 47 species
Lfl_g02298 No alias large subunit beta of AP-1 trans-Golgi network cargo... 0.03 OrthoFinder output from all 47 species
Mp1g25810.1 No alias large subunit beta of AP-1 trans-Golgi network cargo... 0.02 OrthoFinder output from all 47 species
Msp_g00711 No alias large subunit beta of AP-1 trans-Golgi network cargo... 0.03 OrthoFinder output from all 47 species
Msp_g04742 No alias large subunit beta of AP-4 vacuole cargo adaptor complex... 0.02 OrthoFinder output from all 47 species
Nbi_g10984 No alias large subunit beta of AP-1 trans-Golgi network cargo... 0.05 OrthoFinder output from all 47 species
Ore_g18294 No alias large subunit beta of AP-1 trans-Golgi network cargo... 0.03 OrthoFinder output from all 47 species
Pir_g09755 No alias large subunit beta of AP-1 trans-Golgi network cargo... 0.05 OrthoFinder output from all 47 species
Pir_g11812 No alias large subunit beta of AP-4 vacuole cargo adaptor complex... 0.03 OrthoFinder output from all 47 species
Solyc08g081320.3.1 Solyc08g081320 large subunit beta of AP-1 trans-Golgi network cargo... 0.03 OrthoFinder output from all 47 species
Spa_g12477 No alias large subunit beta of AP-1 trans-Golgi network cargo... 0.03 OrthoFinder output from all 47 species
Zm00001e001693_P001 Zm00001e001693 large subunit beta of AP-1 trans-Golgi network cargo... 0.03 OrthoFinder output from all 47 species
Zm00001e038184_P001 Zm00001e038184 large subunit beta of AP-1 trans-Golgi network cargo... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030117 membrane coat IEA Interproscan
CC GO:0030131 clathrin adaptor complex IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006289 nucleotide-excision repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0010498 proteasomal protein catabolic process IEP HCCA
MF GO:0016409 palmitoyltransferase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0030163 protein catabolic process IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR008152 Clathrin_a/b/g-adaptin_app_Ig 617 712
IPR002553 Clathrin/coatomer_adapt-like_N 25 467
IPR015151 B-adaptin_app_sub_C 724 835
No external refs found!