1. Home
  2. Species
  3. Salvinia cucullata
  4. Sequence
  5. Sacu_v1.1_s0043.g012913

Sacu_v1.1_s0043.g012913 (RNEE/G)


Aliases : RNEE/G

Description : endoribonuclease *(RNase E) & original description: CDS=84-3941


Gene families : OG0005953 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005953_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0043.g012913
Cluster HCCA: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
LOC_Os08g23430.1 RNEE/G, LOC_Os08g23430 endoribonuclease (RNase E) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:2001070 starch binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0004096 catalase activity IEP HCCA
MF GO:0004814 arginine-tRNA ligase activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006420 arginyl-tRNA aminoacylation IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008175 tRNA methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016426 tRNA (adenine) methyltransferase activity IEP HCCA
MF GO:0016429 tRNA (adenine-N1-)-methyltransferase activity IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
BP GO:0030488 tRNA methylation IEP HCCA
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
CC GO:0034708 methyltransferase complex IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
CC GO:0043527 tRNA methyltransferase complex IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR019307 RNA-bd_AU-1/RNase_E/G 869 1147
IPR002044 CBM_fam20 376 470
No external refs found!