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  5. Sacu_v1.1_s0042.g012772

Sacu_v1.1_s0042.g012772 (emb2004)


Aliases : emb2004

Description : not classified & original description: CDS=2191-2943


Gene families : OG0006225 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006225_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0042.g012772

Target Alias Description ECC score Gene Family Method Actions
Adi_g059435 emb2004 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g06644 emb2004 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.29G006400.1 emb2004, Ceric.29G006400 not classified & original description: pacid=50625910... 0.06 OrthoFinder output from all 47 species
Dcu_g11648 emb2004 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g00772 emb2004 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g02778 emb2004 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01020179001 emb2004 RAN GTPase-activating protein 1 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
Len_g01858 emb2004 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g04112 emb2004 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Mp4g21830.1 emb2004 RAN GTPase-activating protein 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Msp_g05987 emb2004 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g14237 emb2004 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53011 emb2004 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc05g006170.4.1 emb2004, Solyc05g006170 RAN GTPase-activating protein 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Spa_g06499 emb2004 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e036062_P001 emb2004, Zm00001e036062 RAN GTPase-activating protein 1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0003839 gamma-glutamylcyclotransferase activity IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
BP GO:0006575 cellular modified amino acid metabolic process IEP HCCA
BP GO:0006749 glutathione metabolic process IEP HCCA
BP GO:0006751 glutathione catabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
MF GO:0008942 nitrite reductase [NAD(P)H] activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
MF GO:0016840 carbon-nitrogen lyase activity IEP HCCA
MF GO:0016842 amidine-lyase activity IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0042219 cellular modified amino acid catabolic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043171 peptide catabolic process IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044273 sulfur compound catabolic process IEP HCCA
MF GO:0046857 oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor IEP HCCA
MF GO:0098809 nitrite reductase activity IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001611 Leu-rich_rpt 179 201
IPR001611 Leu-rich_rpt 149 172
IPR001611 Leu-rich_rpt 94 113
IPR001611 Leu-rich_rpt 66 83
IPR001611 Leu-rich_rpt 38 60
IPR001611 Leu-rich_rpt 125 144
IPR001611 Leu-rich_rpt 13 31
IPR001611 Leu-rich_rpt 213 235
IPR001611 Leu-rich_rpt 132 151
IPR001611 Leu-rich_rpt 100 123
No external refs found!