Sacu_v1.1_s0039.g012196 (DCL4, ATDCL4)

Aliases : DCL4, ATDCL4

Description : not classified & original description: CDS=1147-2754

Gene families : OG0000378 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000378_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sacu_v1.1_s0039.g012196
Cluster	HCCA: Cluster_55

Target	Alias	Description	ECC score	Gene Family Method
MA_10434435g0010	DCL1, CAF,...	Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species
Sam_g09089	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g11612	No alias	endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	None	Extended
MF	GO:0004521	endoribonuclease activity	None	Extended
MF	GO:0004525	ribonuclease III activity	IEA	Interproscan
MF	GO:0004540	ribonuclease activity	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	None	Extended
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
MF	GO:0032296	double-stranded RNA-specific ribonuclease activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004045	aminoacyl-tRNA hydrolase activity	IEP	HCCA
MF	GO:0004363	glutathione synthase activity	IEP	HCCA
MF	GO:0005092	GDP-dissociation inhibitor activity	IEP	HCCA
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	HCCA
BP	GO:0006749	glutathione metabolic process	IEP	HCCA
BP	GO:0006750	glutathione biosynthetic process	IEP	HCCA
BP	GO:0007264	small GTPase mediated signal transduction	IEP	HCCA
MF	GO:0016881	acid-amino acid ligase activity	IEP	HCCA
BP	GO:0019184	nonribosomal peptide biosynthetic process	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
BP	GO:0042398	cellular modified amino acid biosynthetic process	IEP	HCCA
BP	GO:0044272	sulfur compound biosynthetic process	IEP	HCCA
MF	GO:1904091	non-ribosomal peptide synthetase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000999	RNase_III_dom	126	231

External Links

No external refs found!

Sacu_v1.1_s0039.g012196 (DCL4, ATDCL4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation