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  5. Sacu_v1.1_s0035.g011451

Sacu_v1.1_s0035.g011451


Description : not classified & original description: CDS=16-1155


Gene families : OG0002523 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002523_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0035.g011451
Cluster HCCA: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
Lfl_g11402 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g18520 EMB16, EMB2036, AKRP not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g41339 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g52287 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g15917 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP HCCA
MF GO:0000049 tRNA binding IEP HCCA
MF GO:0002161 aminoacyl-tRNA editing activity IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0005381 iron ion transmembrane transporter activity IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006826 iron ion transport IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034755 iron ion transmembrane transport IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
MF GO:0046915 transition metal ion transmembrane transporter activity IEP HCCA
MF GO:0051499 D-aminoacyl-tRNA deacylase activity IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR002110 Ankyrin_rpt 271 352
No external refs found!