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  5. Sacu_v1.1_s0032.g010874

Sacu_v1.1_s0032.g010874 (PAT2)


Aliases : PAT2

Description : large subunit beta of AP-3 Golgi to vacuole cargo adaptor complex & original description: CDS=915-4622


Gene families : OG0006164 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006164_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0032.g010874
Cluster HCCA: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
Aob_g12108 PAT2 large subunit beta of AP-3 Golgi to vacuole cargo... 0.03 OrthoFinder output from all 47 species
Ceric.28G061600.1 PAT2, Ceric.28G061600 large subunit beta of AP-3 Golgi to vacuole cargo... 0.03 OrthoFinder output from all 47 species
Zm00001e029209_P001 PAT2, Zm00001e029209 large subunit beta of AP-3 Golgi to vacuole cargo adaptor complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030117 membrane coat IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003909 DNA ligase activity IEP HCCA
MF GO:0003910 DNA ligase (ATP) activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006650 glycerophospholipid metabolic process IEP HCCA
BP GO:0006777 Mo-molybdopterin cofactor biosynthetic process IEP HCCA
MF GO:0015035 protein-disulfide reductase activity IEP HCCA
MF GO:0015036 disulfide oxidoreductase activity IEP HCCA
BP GO:0016197 endosomal transport IEP HCCA
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP HCCA
BP GO:0016482 cytosolic transport IEP HCCA
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP HCCA
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP HCCA
CC GO:0019008 molybdopterin synthase complex IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019720 Mo-molybdopterin cofactor metabolic process IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
BP GO:0032324 molybdopterin cofactor biosynthetic process IEP HCCA
BP GO:0042147 retrograde transport, endosome to Golgi IEP HCCA
BP GO:0043545 molybdopterin cofactor metabolic process IEP HCCA
BP GO:0046486 glycerolipid metabolic process IEP HCCA
BP GO:0046488 phosphatidylinositol metabolic process IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
BP GO:0051189 prosthetic group metabolic process IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR002553 Clathrin/coatomer_adapt-like_N 35 524
IPR002553 Clathrin/coatomer_adapt-like_N 558 703
No external refs found!