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  5. Sacu_v1.1_s0024.g008973

Sacu_v1.1_s0024.g008973 (CID12, ATRBP37, RBP37)


Aliases : CID12, ATRBP37, RBP37

Description : not classified & original description: CDS=173-1417


Gene families : OG0000804 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000804_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0024.g008973
Cluster HCCA: Cluster_52

Target Alias Description ECC score Gene Family Method Actions
Adi_g088808 CID12, ATRBP37, RBP37 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g117217 CID11 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g46209 CID12, ATRBP37, RBP37 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g01661 CID12, ATRBP37, RBP37 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0038.g026169 CID11 not classified & original description: CDS=99-1196 0.05 OrthoFinder output from all 47 species
Cba_g07610 CID12, ATRBP37, RBP37 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g22950 CID12, ATRBP37, RBP37 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g44818 CID12, ATRBP37, RBP37 not classified & original description: none 0.04 OrthoFinder output from all 47 species
LOC_Os01g11120.1 CID9, LOC_Os01g11120 Polyadenylate-binding protein-interacting protein 9... 0.01 OrthoFinder output from all 47 species
Ppi_g02187 CID12, ATRBP37, RBP37 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc10g007590.4.1 CID9, Solyc10g007590 Polyadenylate-binding protein-interacting protein 9... 0.02 OrthoFinder output from all 47 species
Spa_g21523 CID12, ATRBP37, RBP37 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g04083 CID12, ATRBP37, RBP37 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP HCCA
MF GO:0004089 carbonate dehydratase activity IEP HCCA
MF GO:0004888 transmembrane signaling receptor activity IEP HCCA
MF GO:0004970 ionotropic glutamate receptor activity IEP HCCA
MF GO:0005230 extracellular ligand-gated monoatomic ion channel activity IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
MF GO:0008066 glutamate receptor activity IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009116 nucleoside metabolic process IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
MF GO:0015276 ligand-gated monoatomic ion channel activity IEP HCCA
MF GO:0015291 secondary active transmembrane transporter activity IEP HCCA
MF GO:0015297 antiporter activity IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
MF GO:0022824 transmitter-gated monoatomic ion channel activity IEP HCCA
MF GO:0022834 ligand-gated channel activity IEP HCCA
MF GO:0022835 transmitter-gated channel activity IEP HCCA
MF GO:0022836 gated channel activity IEP HCCA
MF GO:0022839 monoatomic ion gated channel activity IEP HCCA
MF GO:0030594 neurotransmitter receptor activity IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
MF GO:0038023 signaling receptor activity IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
MF GO:0042910 xenobiotic transmembrane transporter activity IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0060089 molecular transducer activity IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:1901657 glycosyl compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR009818 Ataxin-2_C 171 185
IPR000504 RRM_dom 228 290
IPR000504 RRM_dom 325 391
No external refs found!