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  5. Sacu_v1.1_s0011.g005132

Sacu_v1.1_s0011.g005132


Description : storage vacuole protein sorting receptor *(RMR) & original description: CDS=293-1588


Gene families : OG0000625 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000625_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0011.g005132

Target Alias Description ECC score Gene Family Method Actions
AT1G71980 No alias Protease-associated (PA) RING/U-box zinc finger family protein 0.03 OrthoFinder output from all 47 species
Adi_g114022 No alias storage vacuole protein sorting receptor *(RMR) &... 0.03 OrthoFinder output from all 47 species
Ceric.15G051900.1 Ceric.15G051900 storage vacuole protein sorting receptor *(RMR) &... 0.04 OrthoFinder output from all 47 species
Dac_g45056 No alias storage vacuole protein sorting receptor *(RMR) &... 0.02 OrthoFinder output from all 47 species
Dcu_g05499 No alias storage vacuole protein sorting receptor *(RMR) &... 0.02 OrthoFinder output from all 47 species
Ehy_g26237 No alias storage vacuole protein sorting receptor *(RMR) &... 0.02 OrthoFinder output from all 47 species
LOC_Os03g07130.2 LOC_Os03g07130 vacuolar sorting receptor (RMR) 0.02 OrthoFinder output from all 47 species
LOC_Os08g01360.2 LOC_Os08g01360 vacuolar sorting receptor (RMR) 0.02 OrthoFinder output from all 47 species
Mp2g20320.1 No alias vacuolar sorting receptor (RMR) 0.02 OrthoFinder output from all 47 species
Mp4g04900.1 No alias vacuolar sorting receptor (RMR) 0.02 OrthoFinder output from all 47 species
Sam_g26169 No alias storage vacuole protein sorting receptor *(RMR) &... 0.02 OrthoFinder output from all 47 species
Sam_g26601 No alias storage vacuole protein sorting receptor *(RMR) &... 0.02 OrthoFinder output from all 47 species
Zm00001e003223_P001 Zm00001e003223 vacuolar sorting receptor (RMR) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
InterPro domains Description Start Stop
IPR003137 PA_domain 87 139
IPR001841 Znf_RING 226 269
No external refs found!