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  5. Sacu_v1.1_s0011.g005027

Sacu_v1.1_s0011.g005027


Description : Trihelix-type transcription factor & original description: CDS=1-1455


Gene families : OG0002113 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002113_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0011.g005027
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
Adi_g019802 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g069214 No alias Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g00745 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene40959.t1 Aspi01Gene40959 Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g16065 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g09323 No alias Trihelix-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR044822 Myb_DNA-bind_4 89 178
No external refs found!