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  5. Sacu_v1.1_s0006.g003000

Sacu_v1.1_s0006.g003000


Description : component *(CASC3) of RNA quality control Exon Junction complex & original description: CDS=1-2055


Gene families : OG0002816 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002816_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0006.g003000

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00142p00054380 evm_27.TU.AmTr_v1... RNA processing.RNA quality control Exon Junction complex... 0.03 OrthoFinder output from all 47 species
Adi_g004430 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g074719 No alias component *(CASC3) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Adi_g099558 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g20399 No alias component *(CASC3) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Als_g57002 No alias component *(CASC3) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Aspi01Gene44752.t1 Aspi01Gene44752 component *(CASC3) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Cba_g75996 No alias component *(CASC3) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Dac_g09674 No alias component *(CASC3) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Dde_g18049 No alias component *(CASC3) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Len_g11567 No alias component *(CASC3) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
MA_10431738g0010 No alias component CASC3 of RNA quality control Exon Junction complex 0.03 OrthoFinder output from all 47 species
Mp8g03760.1 No alias component CASC3 of RNA quality control Exon Junction complex 0.04 OrthoFinder output from all 47 species
Msp_g16058 No alias component *(CASC3) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Sam_g27144 No alias component *(CASC3) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Tin_g04726 No alias component *(CASC3) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEA Interproscan
BP GO:0006397 mRNA processing IEA Interproscan
CC GO:0035145 exon-exon junction complex IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
BP GO:0006476 protein deacetylation IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016575 histone deacetylation IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016840 carbon-nitrogen lyase activity IEP HCCA
MF GO:0016843 amine-lyase activity IEP HCCA
MF GO:0016844 strictosidine synthase activity IEP HCCA
CC GO:0031011 Ino80 complex IEP HCCA
BP GO:0035601 protein deacylation IEP HCCA
CC GO:0070603 SWI/SNF superfamily-type complex IEP HCCA
CC GO:0097346 INO80-type complex IEP HCCA
BP GO:0098732 macromolecule deacylation IEP HCCA
CC GO:1904949 ATPase complex IEP HCCA
InterPro domains Description Start Stop
IPR018545 Btz_dom 113 199
No external refs found!