1. Home
  2. Species
  3. Salvinia cucullata
  4. Sequence
  5. Sacu_v1.1_s0002.g000998

Sacu_v1.1_s0002.g000998 (DCL1, CAF, EMB76,...)


Aliases : DCL1, CAF, EMB76, SIN1, ATDCL1, EMB60, SUS1, ASU1

Description : endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA biogenesis complex & original description: CDS=1325-5167


Gene families : OG0000378 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000378_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0002.g000998
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
AT1G01040 DCL1, CAF,... dicer-like 1 0.03 OrthoFinder output from all 47 species
Dcu_g36083 DCL4, ATDCL4 endoribonuclease (DCL4) of transacting siRNA pathway &... 0.03 OrthoFinder output from all 47 species
Ehy_g18573 DCL4, ATDCL4 endoribonuclease (DCL4) of transacting siRNA pathway &... 0.02 OrthoFinder output from all 47 species
Nbi_g07904 DCL4, ATDCL4 endoribonuclease (DCL4) of transacting siRNA pathway &... 0.02 OrthoFinder output from all 47 species
Pnu_g16845 DCL1, CAF,... endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... 0.03 OrthoFinder output from all 47 species
Solyc10g004000.1.1 DCL1, CAF,... endoribonuclease component DCL1 of DCL1-HYL1 miRNA... 0.03 OrthoFinder output from all 47 species
Tin_g29214 DCL4, ATDCL4 endoribonuclease (DCL4) of transacTing siRNA pathway &... 0.02 OrthoFinder output from all 47 species
Zm00001e012492_P003 ATDCL2, DCL2,... Endoribonuclease Dicer homolog 2a OS=Oryza sativa subsp.... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004525 ribonuclease III activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0006396 RNA processing IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
CC GO:0005789 endoplasmic reticulum membrane IEP HCCA
BP GO:0006497 protein lipidation IEP HCCA
BP GO:0006505 GPI anchor metabolic process IEP HCCA
BP GO:0006506 GPI anchor biosynthetic process IEP HCCA
BP GO:0006643 membrane lipid metabolic process IEP HCCA
BP GO:0006650 glycerophospholipid metabolic process IEP HCCA
BP GO:0006661 phosphatidylinositol biosynthetic process IEP HCCA
BP GO:0006664 glycolipid metabolic process IEP HCCA
BP GO:0006914 autophagy IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
BP GO:0009247 glycolipid biosynthetic process IEP HCCA
BP GO:0009314 response to radiation IEP HCCA
BP GO:0009411 response to UV IEP HCCA
BP GO:0009416 response to light stimulus IEP HCCA
BP GO:0009628 response to abiotic stimulus IEP HCCA
BP GO:0045017 glycerolipid biosynthetic process IEP HCCA
BP GO:0046467 membrane lipid biosynthetic process IEP HCCA
BP GO:0046474 glycerophospholipid biosynthetic process IEP HCCA
BP GO:0046486 glycerolipid metabolic process IEP HCCA
BP GO:0046488 phosphatidylinositol metabolic process IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
BP GO:0061919 process utilizing autophagic mechanism IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
CC GO:1902554 serine/threonine protein kinase complex IEP HCCA
CC GO:1902911 protein kinase complex IEP HCCA
BP GO:1903509 liposaccharide metabolic process IEP HCCA
CC GO:1990316 Atg1/ULK1 kinase complex IEP HCCA
InterPro domains Description Start Stop
IPR003100 PAZ_dom 588 718
IPR001650 Helicase_C 28 145
IPR014720 dsRBD_dom 1116 1176
IPR000999 RNase_III_dom 976 1089
IPR000999 RNase_III_dom 755 900
No external refs found!