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  5. Sacu_v1.1_s0002.g000943

Sacu_v1.1_s0002.g000943


Description : outer membrane porin *(OEP40) & original description: CDS=1-2043


Gene families : OG0002774 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002774_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0002.g000943

Target Alias Description ECC score Gene Family Method Actions
Adi_g056589 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g056591 No alias plastidial regulatory protein *(EXECUTER) of singlet... 0.03 OrthoFinder output from all 47 species
Aob_g04429 No alias plastidial regulatory protein *(EXECUTER) of singlet... 0.04 OrthoFinder output from all 47 species
Ceric.30G051700.1 EX1, Ceric.30G051700 plastidial regulatory protein *(EXECUTER) of singlet... 0.03 OrthoFinder output from all 47 species
Cre03.g163500 No alias Protein EXECUTER 2, chloroplastic OS=Oryza sativa subsp. japonica 0.02 OrthoFinder output from all 47 species
Ehy_g07075 No alias plastidial regulatory protein *(EXECUTER) of singlet... 0.04 OrthoFinder output from all 47 species
Gb_01772 EX1 Protein EXECUTER 1, chloroplastic OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Lfl_g15638 No alias plastidial regulatory protein *(EXECUTER) of singlet... 0.02 OrthoFinder output from all 47 species
Ore_g15371 No alias plastidial regulatory protein *(EXECUTER) of singlet... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004540 ribonuclease activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
CC GO:0000786 nucleosome IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003724 RNA helicase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004470 malic enzyme activity IEP HCCA
MF GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008186 ATP-dependent activity, acting on RNA IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016615 malate dehydrogenase activity IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0030488 tRNA methylation IEP HCCA
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP HCCA
BP GO:0032259 methylation IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
CC GO:0034708 methyltransferase complex IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
CC GO:0043527 tRNA methyltransferase complex IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR021139 NYN_MARF1 62 193
IPR025605 OST-HTH/LOTUS_dom 78 141
No external refs found!