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  5. Sacu_v1.1_s0002.g000825

Sacu_v1.1_s0002.g000825


Description : not classified & original description: CDS=373-1662


Gene families : OG0001265 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001265_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0002.g000825

Target Alias Description ECC score Gene Family Method Actions
Adi_g083877 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g12179 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g16104 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g08051 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.01G051600.1 Ceric.01G051600 not classified & original description: pacid=50592490... 0.03 OrthoFinder output from all 47 species
Ceric.25G014900.1 Ceric.25G014900 not classified & original description: pacid=50594354... 0.01 OrthoFinder output from all 47 species
Ceric.27G020300.1 Ceric.27G020300 not classified & original description: pacid=50605628... 0.04 OrthoFinder output from all 47 species
Ceric.31G061400.1 Ceric.31G061400 not classified & original description: pacid=50575101... 0.04 OrthoFinder output from all 47 species
Dac_g27748 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g04857 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g15768 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g02841 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07743 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g10217 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g09665 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g40752 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g15398 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g00806 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g01889 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e018673_P002 Zm00001e018673 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP HCCA
MF GO:0004594 pantothenate kinase activity IEP HCCA
MF GO:0004659 prenyltransferase activity IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
MF GO:0008318 protein prenyltransferase activity IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0015936 coenzyme A metabolic process IEP HCCA
BP GO:0015937 coenzyme A biosynthetic process IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP HCCA
BP GO:0018342 protein prenylation IEP HCCA
MF GO:0019104 DNA N-glycosylase activity IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
BP GO:0033865 nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0033866 nucleoside bisphosphate biosynthetic process IEP HCCA
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034030 ribonucleoside bisphosphate biosynthetic process IEP HCCA
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034033 purine nucleoside bisphosphate biosynthetic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0097354 prenylation IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 292 349
IPR000504 RRM_dom 13 80
IPR000504 RRM_dom 101 161
No external refs found!