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  5. Sacu_v1.1_s0001.g000625

Sacu_v1.1_s0001.g000625 (EIF4A-2)


Aliases : EIF4A-2

Description : not classified & original description: CDS=1-921


Gene families : OG0000532 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000532_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0001.g000625
Cluster HCCA: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00068p00116790 EIF4A-2,... Eukaryotic initiation factor 4A-9 OS=Nicotiana tabacum 0.02 OrthoFinder output from all 47 species
Adi_g022927 EIF4A-III helicase component *(eIF4A3) of RNA quality control Exon... 0.02 OrthoFinder output from all 47 species
Adi_g022928 EIF4A-III not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g104376 EIF4A-III helicase component *(eIF4A3) of RNA quality control Exon... 0.02 OrthoFinder output from all 47 species
Adi_g114926 EIF4A-2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g07810 EIF4A-2 mRNA unwinding factor *(eIF4A)) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g05564 EIF4A-2 mRNA unwinding factor *(eIF4A)) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g13754 EIF4A-2 mRNA unwinding factor *(eIF4A)) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g20425 EIF4A-2 mRNA unwinding factor *(eIF4A)) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g03155 EIF4A-III helicase component *(eIF4A3) of RNA quality control Exon... 0.03 OrthoFinder output from all 47 species
Azfi_s0064.g035634 EIF4A-III not classified & original description: CDS=274-1275 0.04 OrthoFinder output from all 47 species
Cba_g12127 EIF4A-2 mRNA unwinding factor *(eIF4A)) & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g03718 EIF4A-2 mRNA unwinding factor *(eIF4A)) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g04610 No alias mRNA unwinding factor *(eIF4A)) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g15917 EIF4A-2 mRNA unwinding factor *(eIF4A)) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e023523_P001 EIF4A-III, Zm00001e023523 helicase component eIF4A3 of RNA quality control Exon... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006188 IMP biosynthetic process IEP HCCA
BP GO:0006189 'de novo' IMP biosynthetic process IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009123 nucleoside monophosphate metabolic process IEP HCCA
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP HCCA
BP GO:0009127 purine nucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009156 ribonucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP HCCA
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP HCCA
BP GO:0009168 purine ribonucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
BP GO:0030258 lipid modification IEP HCCA
BP GO:0030259 lipid glycosylation IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0046040 IMP metabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 61 208
No external refs found!