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  5. Sacu_v1.1_s0001.g000349

Sacu_v1.1_s0001.g000349 (ATRAD18, SMC6B, MIM)


Aliases : ATRAD18, SMC6B, MIM

Description : regulatory component *(MICU) of MCU calcium uniporter complex & original description: CDS=207-4403


Gene families : OG0004807 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004807_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0001.g000349

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00106p00113730 ATRAD18, SMC6B,... DNA damage response.DNA repair mechanisms.homologous... 0.02 OrthoFinder output from all 47 species
Aop_g09177 ATRAD18, SMC6B, MIM component *(SMC6) of homologous recombination repair... 0.02 OrthoFinder output from all 47 species
Len_g01400 ATRAD18, SMC6B, MIM component *(SMC6) of homologous recombination repair... 0.03 OrthoFinder output from all 47 species
Solyc05g051680.4.1 ATRAD18, SMC6B,... component SMC6 of homologous recombination repair... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEA Interproscan
MF GO:0140664 ATP-dependent DNA damage sensor activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004486 methylenetetrahydrofolate dehydrogenase [NAD(P)+] activity IEP HCCA
MF GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008535 respiratory chain complex IV assembly IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP HCCA
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0017004 cytochrome complex assembly IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0033108 mitochondrial respiratory chain complex assembly IEP HCCA
BP GO:0033617 mitochondrial cytochrome c oxidase assembly IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR002048 EF_hand_dom 42 98
IPR038729 Rad50/SbcC_AAA 338 564
No external refs found!