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  5. Azfi_s1282.g100862

Azfi_s1282.g100862 (RPL10B)


Aliases : RPL10B

Description : component *(uL16) of large ribosomal-subunit (LSU) proteome & original description: CDS=1-708


Gene families : OG0001847 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001847_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s1282.g100862
Cluster HCCA: Cluster_96

Target Alias Description ECC score Gene Family Method Actions
AT1G14320 SAC52, RPL10, RPL10A Ribosomal protein L16p/L10e family protein 0.04 OrthoFinder output from all 47 species
Ceric.10G071500.1 RPL10B, Ceric.10G071500 component *(uL16) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
GSVIVT01001137001 RPL10B 60S ribosomal protein L10 OS=Vitis riparia 0.03 OrthoFinder output from all 47 species
Gb_06067 RPL10B component RPL10 of LSU proteome component 0.04 OrthoFinder output from all 47 species
LOC_Os11g11390.1 RPL10B, LOC_Os11g11390 component RPL10 of LSU proteome component 0.03 OrthoFinder output from all 47 species
MA_17326g0010 SAC52, RPL10, RPL10A component RPL10 of LSU proteome component 0.04 OrthoFinder output from all 47 species
Mp4g23990.1 RPL10B component RPL10 of LSU proteome component 0.06 OrthoFinder output from all 47 species
Msp_g21522 RPL10B component *(uL16) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Pp3c2_29600V3.1 RPL10B, Pp3c2_29600 Ribosomal protein L16p/L10e family protein 0.03 OrthoFinder output from all 47 species
Solyc06g007520.4.1 RPL10B, Solyc06g007520 component RPL10 of LSU proteome component 0.05 OrthoFinder output from all 47 species
Solyc06g082650.4.1 SAC52, RPL10,... component RPL10 of LSU proteome component 0.05 OrthoFinder output from all 47 species
Solyc06g082670.3.1 RPL10B, Solyc06g082670 component RPL10 of LSU proteome component 0.05 OrthoFinder output from all 47 species
Spa_g51059 RPL10C, SAG24 component *(uL16) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Zm00001e004933_P001 RPL10B, Zm00001e004933 component RPL10 of LSU proteome component 0.05 OrthoFinder output from all 47 species
Zm00001e012474_P002 RPL10C, SAG24,... component RPL10 of LSU proteome component 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR016180 Ribosomal_L10e/L16 25 179
No external refs found!