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  5. Azfi_s0621.g079590

Azfi_s0621.g079590 (EMB2777)


Aliases : EMB2777

Description : regulatory protein *(THAL) of rRNA transcription control & original description: CDS=128-1918


Gene families : OG0001866 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001866_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0621.g079590
Cluster HCCA: Cluster_96

Target Alias Description ECC score Gene Family Method Actions
AT2G43650 EMB2777 Sas10/U3 ribonucleoprotein (Utp) family protein 0.03 OrthoFinder output from all 47 species
Aev_g18206 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g07657 EMB2777 regulatory protein *(THAL) of rRNA transcription control... 0.02 OrthoFinder output from all 47 species
Ceric.01G022400.1 EMB2777, Ceric.01G022400 regulatory protein *(THAL) of rRNA transcription control... 0.05 OrthoFinder output from all 47 species
Dcu_g09906 EMB2777 regulatory protein *(THAL) of rRNA transcription control... 0.03 OrthoFinder output from all 47 species
GSVIVT01009200001 No alias No description available 0.03 OrthoFinder output from all 47 species
MA_348135g0010 EMB2777 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Sam_g16677 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo405212 EMB2777 No description available 0.03 OrthoFinder output from all 47 species
Solyc11g072390.2.1 EMB2777, Solyc11g072390 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Tin_g20581 EMB2777 regulatory protein *(THAL) of rRNA transcription control... 0.03 OrthoFinder output from all 47 species
Zm00001e003450_P001 EMB2777, Zm00001e003450 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
InterPro domains Description Start Stop
IPR018972 Sas10_C_dom 522 594
IPR007146 Sas10/Utp3/C1D 256 336
No external refs found!