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  5. Azfi_s0578.g078268

Azfi_s0578.g078268 (TPL, WSIP1)


Aliases : TPL, WSIP1

Description : transcriptional co-repressor *(TPL/TPR) & original description: CDS=1-3699


Gene families : OG0000427 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000427_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0578.g078268
Cluster HCCA: Cluster_71

Target Alias Description ECC score Gene Family Method Actions
AT1G15750 TPL, WSIP1 Transducin family protein / WD-40 repeat family protein 0.04 OrthoFinder output from all 47 species
Adi_g012443 TPL, WSIP1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g117102 TPL, WSIP1 transcriptional co-repressor *(TPL/TPR) & original... 0.04 OrthoFinder output from all 47 species
Aev_g05875 TPL, WSIP1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g04614 TPL, WSIP1 transcriptional co-repressor *(TPL/TPR) & original... 0.03 OrthoFinder output from all 47 species
Ceric.08G073000.1 TPL, WSIP1,... transcriptional co-repressor *(TPL/TPR) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01017487001 TPL, WSIP1 RNA biosynthesis.transcriptional repression.TPL/TPR... 0.03 OrthoFinder output from all 47 species
Pir_g56913 TPL, WSIP1 transcriptional co-repressor *(TPL/TPR) & original... 0.05 OrthoFinder output from all 47 species
Solyc08g076030.3.1 TPL, WSIP1,... transcriptional repressor (TPL). transcriptional... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 1009 1041
IPR001680 WD40_repeat 553 587
No external refs found!