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  5. Azfi_s0250.g060221

Azfi_s0250.g060221 (ATHDA15, HDA15)


Aliases : ATHDA15, HDA15

Description : class-II histone deacetylase & original description: CDS=93-1925


Gene families : OG0001559 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001559_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0250.g060221
Cluster HCCA: Cluster_96

Target Alias Description ECC score Gene Family Method Actions
Adi_g055256 ATHDA15, HDA15 class-II histone deacetylase & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g06072 ATHDA5, HDA05, HDA5 class-II histone deacetylase & original description: none 0.03 OrthoFinder output from all 47 species
Als_g01049 ATHDA15, HDA15 class-II histone deacetylase & original description: none 0.04 OrthoFinder output from all 47 species
Als_g17859 ATHDA5, HDA05, HDA5 class-II histone deacetylase & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g14691 ATHDA15, HDA15 class-II histone deacetylase & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g18820 ATHDA15, HDA15 class-II histone deacetylase & original description: none 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000093.133 ATHDA5, HDA05, HDA5 Histone deacetylase 5 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Cre03.g160000 ATHDA15, HDA15 Chromatin organisation.histone modifications.histone... 0.02 OrthoFinder output from all 47 species
Cre03.g162050 ATHDA15, HDA15 Histone deacetylase 15 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Dcu_g14604 ATHDA15, HDA15 class-II histone deacetylase & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01008242001 ATHDA15, HDA15 Chromatin organisation.histone modifications.histone... 0.05 OrthoFinder output from all 47 species
LOC_Os07g06980.1 ATHDA15, HDA15,... class-II histone deacetylase 0.04 OrthoFinder output from all 47 species
LOC_Os07g41090.1 ATHDA5, HDA05,... class-II histone deacetylase 0.05 OrthoFinder output from all 47 species
Mp1g20110.1 ATHDA15, HDA15 class-II histone deacetylase 0.03 OrthoFinder output from all 47 species
Pnu_g09864 ATHDA15, HDA15 class-II histone deacetylase & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g49320 No alias class-II histone deacetylase & original description: none 0.02 OrthoFinder output from all 47 species
Solyc03g119730.3.1 ATHDA15, HDA15,... class-II histone deacetylase 0.04 OrthoFinder output from all 47 species
Spa_g07852 ATHDA15, HDA15 class-II histone deacetylase & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006405 RNA export from nucleus IEP HCCA
BP GO:0006406 mRNA export from nucleus IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0009890 negative regulation of biosynthetic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
BP GO:0016973 poly(A)+ mRNA export from nucleus IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
BP GO:0031324 negative regulation of cellular metabolic process IEP HCCA
BP GO:0031327 negative regulation of cellular biosynthetic process IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0045892 negative regulation of DNA-templated transcription IEP HCCA
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048523 negative regulation of cellular process IEP HCCA
BP GO:0050657 nucleic acid transport IEP HCCA
BP GO:0050658 RNA transport IEP HCCA
BP GO:0051028 mRNA transport IEP HCCA
BP GO:0051168 nuclear export IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051236 establishment of RNA localization IEP HCCA
BP GO:0051253 negative regulation of RNA metabolic process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1902679 negative regulation of RNA biosynthetic process IEP HCCA
BP GO:1903507 negative regulation of nucleic acid-templated transcription IEP HCCA
InterPro domains Description Start Stop
IPR023801 His_deacetylse_dom 235 523
No external refs found!