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  5. Azfi_s0116.g046404

Azfi_s0116.g046404 (VPS9, ATVPS9A, VPS9A)


Aliases : VPS9, ATVPS9A, VPS9A

Description : RAB5 nucleotide exchange factor *(VPS9) & original description: CDS=215-1945


Gene families : OG0004643 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004643_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0116.g046404
Cluster HCCA: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
Aev_g04707 VPS9, ATVPS9A, VPS9A RAB5 nucleotide exchange factor *(VPS9) & original... 0.02 OrthoFinder output from all 47 species
Solyc01g096990.4.1 VPS9, ATVPS9A,... RAB5 guanine nucleotide exchange factor (VPS9) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030118 clathrin coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030125 clathrin vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP HCCA
CC GO:0030132 clathrin coat of coated pit IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
InterPro domains Description Start Stop
IPR041545 DUF5601 48 97
IPR003123 VPS9 144 201
IPR003123 VPS9 289 333
No external refs found!