MA_10426554g0020


Description : pre-mRNA splicing factor (SF1)


Gene families : OG_01_0001047 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001047_tree ,
OG_02_0011680 (LandPlants) Phylogenetic Tree(s): OG_02_0011680_tree ,
OG_03_0011121 (SeedPlants) Phylogenetic Tree(s): OG_03_0011121_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10426554g0020
Cluster HCCA: Cluster_212

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00180690 evm_27.TU.AmTr_v1... Splicing factor-like protein 1 OS=Arabidopsis thaliana 0.02 Archaeplastida
AT3G32940 No alias RNA-binding KH domain-containing protein 0.03 Archaeplastida
Cre12.g553750 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 Archaeplastida
Gb_09287 No alias pre-mRNA splicing factor (SF1) 0.03 Archaeplastida
Gb_19921 No alias pre-mRNA splicing factor (SF1) 0.03 Archaeplastida
Gb_23987 No alias pre-mRNA splicing factor (SF1) 0.04 Archaeplastida
Gb_41039 No alias pre-mRNA splicing factor (SF1) 0.04 Archaeplastida
MA_8555g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Mp7g15050.1 No alias pre-mRNA splicing factor (SF1) 0.02 Archaeplastida
Pp3c11_24710V3.1 No alias splicing factor-related 0.02 Archaeplastida
Pp3c7_10890V3.1 No alias splicing factor-related 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000504 RRM_dom 680 749
IPR032570 SF1-HH 146 258
IPR004088 KH_dom_type_1 282 354
No external refs found!