- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : component *(cS23) of small plastid ribosomal-subunit proteome & original description: CDS=150-629
Gene families : OG0003343 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003343_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Azfi_s0052.g031601 | |
| Cluster | HCCA: Cluster_74 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00010p00055110 | evm_27.TU.AmTr_v1... | Protein biosynthesis.organelle translation... | 0.08 | OrthoFinder output from all 47 species | |
| AT1G68590 | No alias | Ribosomal protein PSRP-3/Ycf65 | 0.1 | OrthoFinder output from all 47 species | |
| Adi_g023800 | No alias | component *(cS23) of small plastid ribosomal-subunit... | 0.04 | OrthoFinder output from all 47 species | |
| Ala_g00515 | No alias | component *(cS23) of small plastid ribosomal-subunit... | 0.06 | OrthoFinder output from all 47 species | |
| Als_g28969 | No alias | component *(cS23) of small plastid ribosomal-subunit... | 0.05 | OrthoFinder output from all 47 species | |
| Aob_g07615 | No alias | component *(cS23) of small plastid ribosomal-subunit... | 0.04 | OrthoFinder output from all 47 species | |
| Aob_g08130 | No alias | component *(cS23) of small plastid ribosomal-subunit... | 0.06 | OrthoFinder output from all 47 species | |
| Aob_g18441 | No alias | component *(cS23) of small plastid ribosomal-subunit... | 0.05 | OrthoFinder output from all 47 species | |
| Aop_g00272 | No alias | component *(cS23) of small plastid ribosomal-subunit... | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene46394.t1 | Aspi01Gene46394 | component *(cS23) of small plastid ribosomal-subunit... | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g17074 | No alias | component *(cS23) of small plastid ribosomal-subunit... | 0.01 | OrthoFinder output from all 47 species | |
| Cba_g32123 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g68856 | No alias | component *(cS23) of small plastid ribosomal-subunit... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.23G039300.1 | Ceric.23G039300 | component *(cS23) of small plastid ribosomal-subunit... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.29G082200.1 | Ceric.29G082200 | component *(cS23) of small plastid ribosomal-subunit... | 0.07 | OrthoFinder output from all 47 species | |
| Cre02.g083950 | No alias | Protein biosynthesis.organelle translation... | 0.06 | OrthoFinder output from all 47 species | |
| Dcu_g00469 | No alias | component *(cS23) of small plastid ribosomal-subunit... | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g05305 | No alias | component *(cS23) of small plastid ribosomal-subunit... | 0.06 | OrthoFinder output from all 47 species | |
| Dde_g13740 | No alias | component *(cS23) of small plastid ribosomal-subunit... | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g06384 | No alias | component *(cS23) of small plastid ribosomal-subunit... | 0.06 | OrthoFinder output from all 47 species | |
| GSVIVT01031053001 | No alias | Protein biosynthesis.organelle translation... | 0.09 | OrthoFinder output from all 47 species | |
| Gb_30016 | No alias | component psPSRP3 of small ribosomal subunit proteome | 0.06 | OrthoFinder output from all 47 species | |
| LOC_Os04g38750.1 | LOC_Os04g38750 | component psPSRP3 of small ribosomal subunit proteome | 0.04 | OrthoFinder output from all 47 species | |
| Len_g12700 | No alias | component *(cS23) of small plastid ribosomal-subunit... | 0.03 | OrthoFinder output from all 47 species | |
| Len_g27723 | No alias | component *(cS23) of small plastid ribosomal-subunit... | 0.03 | OrthoFinder output from all 47 species | |
| Len_g56473 | No alias | component *(cS23) of small plastid ribosomal-subunit... | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g02667 | No alias | component *(cS23) of small plastid ribosomal-subunit... | 0.04 | OrthoFinder output from all 47 species | |
| MA_10432955g0010 | No alias | component psPSRP3 of small ribosomal subunit proteome | 0.03 | OrthoFinder output from all 47 species | |
| MA_19834g0010 | No alias | component psPSRP3 of small ribosomal subunit proteome | 0.04 | OrthoFinder output from all 47 species | |
| Mp2g13520.1 | No alias | component psPSRP3 of small ribosomal subunit proteome | 0.11 | OrthoFinder output from all 47 species | |
| Nbi_g11062 | No alias | component *(cS23) of small plastid ribosomal-subunit... | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g11760 | No alias | component *(cS23) of small plastid ribosomal-subunit... | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g05910 | No alias | component *(cS23) of small plastid ribosomal-subunit... | 0.04 | OrthoFinder output from all 47 species | |
| Ore_g26894 | No alias | component *(cS23) of small plastid ribosomal-subunit... | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g18227 | No alias | component *(cS23) of small plastid ribosomal-subunit... | 0.04 | OrthoFinder output from all 47 species | |
| Pnu_g09092 | No alias | component *(cS23) of small plastid ribosomal-subunit... | 0.04 | OrthoFinder output from all 47 species | |
| Pp3c6_19070V3.1 | Pp3c6_19070 | Ribosomal protein PSRP-3/Ycf65 | 0.01 | OrthoFinder output from all 47 species | |
| Ppi_g18636 | No alias | component *(cS23) of small plastid ribosomal-subunit... | 0.04 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0075.g017327 | No alias | EC_3.4 hydrolase acting on peptide bond (peptidase) &... | 0.06 | OrthoFinder output from all 47 species | |
| Sam_g23730 | No alias | component *(cS23) of small plastid ribosomal-subunit... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc03g034190.3.1 | Solyc03g034190 | component psPSRP3 of small ribosomal subunit proteome | 0.07 | OrthoFinder output from all 47 species | |
| Solyc05g009570.3.1 | Solyc05g009570 | component psPSRP3 of small ribosomal subunit proteome | 0.11 | OrthoFinder output from all 47 species | |
| Spa_g01460 | No alias | component *(cS23) of small plastid ribosomal-subunit... | 0.07 | OrthoFinder output from all 47 species | |
| Spa_g06637 | No alias | component *(cS23) of small plastid ribosomal-subunit... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e007903_P001 | Zm00001e007903 | component psPSRP3 of small ribosomal subunit proteome | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e041019_P001 | Zm00001e041019 | component psPSRP3 of small ribosomal subunit proteome | 0.09 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000049 | tRNA binding | IEP | HCCA |
| MF | GO:0003735 | structural constituent of ribosome | IEP | HCCA |
| MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | HCCA |
| MF | GO:0005198 | structural molecule activity | IEP | HCCA |
| CC | GO:0005840 | ribosome | IEP | HCCA |
| BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
| BP | GO:0006412 | translation | IEP | HCCA |
| BP | GO:0006518 | peptide metabolic process | IEP | HCCA |
| BP | GO:0006771 | riboflavin metabolic process | IEP | HCCA |
| MF | GO:0008686 | 3,4-dihydroxy-2-butanone-4-phosphate synthase activity | IEP | HCCA |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0009231 | riboflavin biosynthetic process | IEP | HCCA |
| MF | GO:0016651 | oxidoreductase activity, acting on NAD(P)H | IEP | HCCA |
| MF | GO:0016655 | oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | IEP | HCCA |
| MF | GO:0016730 | oxidoreductase activity, acting on iron-sulfur proteins as donors | IEP | HCCA |
| MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0042726 | flavin-containing compound metabolic process | IEP | HCCA |
| BP | GO:0042727 | flavin-containing compound biosynthetic process | IEP | HCCA |
| BP | GO:0043038 | amino acid activation | IEP | HCCA |
| BP | GO:0043039 | tRNA aminoacylation | IEP | HCCA |
| BP | GO:0043043 | peptide biosynthetic process | IEP | HCCA |
| CC | GO:0043226 | organelle | IEP | HCCA |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | HCCA |
| CC | GO:0043229 | intracellular organelle | IEP | HCCA |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | HCCA |
| BP | GO:0043603 | amide metabolic process | IEP | HCCA |
| BP | GO:0043604 | amide biosynthetic process | IEP | HCCA |
| BP | GO:0044249 | cellular biosynthetic process | IEP | HCCA |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | HCCA |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | HCCA |
| MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | HCCA |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | HCCA |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | HCCA |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |