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  5. MA_10426444g0010

MA_10426444g0010


Description : Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana (sp|q9svp7|pp307_arath : 713.0)


Gene families : OG_01_0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_02_0000000 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_03_0000000 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10426444g0010
Cluster HCCA: Cluster_538

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00257020 evm_27.TU.AmTr_v1... External stimuli response.light.UV-A/blue... 0.03 Archaeplastida
AMTR_s00031p00067070 No alias Pentatricopeptide repeat-containing protein At5g03800... 0.04 Archaeplastida
AMTR_s00032p00177680 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
AMTR_s00039p00132380 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
AMTR_s00046p00214930 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
AMTR_s00049p00210350 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
AMTR_s00053p00090700 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g13880... 0.03 Archaeplastida
AMTR_s00057p00172690 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g37170... 0.02 Archaeplastida
AMTR_s00068p00072270 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
AMTR_s00077p00031710 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g27610... 0.06 Archaeplastida
AMTR_s00130p00019530 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
AMTR_s02193p00008230 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g02330,... 0.02 Archaeplastida
AT1G11290 CRR22 Pentatricopeptide repeat (PPR) superfamily protein 0.06 Archaeplastida
AT1G15510 VAC1, ECB2, ATECB2 Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
AT1G18485 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 Archaeplastida
AT2G02980 OTP85 Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
AT3G22150 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.07 Archaeplastida
AT3G57430 OTP84 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT5G03800 emb1899, EMB175, EMB166 Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
AT5G55740 CRR21 Tetratricopeptide repeat (TPR)-like superfamily protein 0.07 Archaeplastida
AT5G66520 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
Cpa|evm.model.tig00001038.5 No alias No description available 0.01 Archaeplastida
Cre08.g358250 No alias Pentatricopeptide repeat-containing protein At5g02860... 0.02 Archaeplastida
GSVIVT01008965001 No alias Pentatricopeptide repeat-containing protein At4g18520,... 0.03 Archaeplastida
GSVIVT01009227001 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.04 Archaeplastida
GSVIVT01009407001 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 Archaeplastida
GSVIVT01009789001 No alias Pentatricopeptide repeat-containing protein At1g19720... 0.07 Archaeplastida
GSVIVT01011333001 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.03 Archaeplastida
GSVIVT01011479001 No alias Pentatricopeptide repeat-containing protein At3g29230... 0.03 Archaeplastida
GSVIVT01012461001 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
GSVIVT01013023001 No alias Pentatricopeptide repeat-containing protein At1g31920... 0.03 Archaeplastida
GSVIVT01017365001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
GSVIVT01023971001 No alias Pentatricopeptide repeat-containing protein At4g35130,... 0.04 Archaeplastida
GSVIVT01027077001 No alias RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
GSVIVT01031251001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.05 Archaeplastida
GSVIVT01032721001 No alias Pentatricopeptide repeat-containing protein At3g53360,... 0.07 Archaeplastida
GSVIVT01033190001 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.07 Archaeplastida
GSVIVT01033389001 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
GSVIVT01036142001 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.04 Archaeplastida
Gb_00776 No alias Pentatricopeptide repeat-containing protein At5g50390,... 0.05 Archaeplastida
Gb_10113 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.03 Archaeplastida
Gb_11688 No alias OTP70 plastidial RNA splicing factor 0.02 Archaeplastida
Gb_14867 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_18015 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
Gb_21443 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.06 Archaeplastida
Gb_26526 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.04 Archaeplastida
Gb_36806 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.06 Archaeplastida
LOC_Os01g62910.1 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.02 Archaeplastida
LOC_Os03g44210.2 No alias RNA editing factor (SEL1/PDM1) 0.02 Archaeplastida
LOC_Os04g02850.1 No alias RNA editing factor (OTP84) 0.06 Archaeplastida
LOC_Os05g49920.1 No alias RNA editing factor (ECB2/VAC1) 0.03 Archaeplastida
LOC_Os07g07620.1 No alias Pentatricopeptide repeat-containing protein At5g03800... 0.06 Archaeplastida
LOC_Os07g09370.1 No alias RNA editing factor (CRR28) 0.04 Archaeplastida
LOC_Os11g29230.1 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
LOC_Os12g30620.1 No alias Pentatricopeptide repeat-containing protein At3g29230... 0.02 Archaeplastida
MA_16339g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
MA_59599g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
Pp3c24_8560V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
Smo173139 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
Smo90123 No alias Pentatricopeptide repeat-containing protein At3g22690... 0.02 Archaeplastida
Solyc01g007850.2.1 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Solyc01g095690.2.1 No alias Pentatricopeptide repeat-containing protein At4g01030,... 0.04 Archaeplastida
Solyc01g098150.3.1 No alias Pentatricopeptide repeat-containing protein At5g03800... 0.03 Archaeplastida
Solyc02g081900.4.1 No alias RNA editing factor (OTP84) 0.02 Archaeplastida
Solyc02g088470.1.1 No alias Pentatricopeptide repeat-containing protein At3g29230... 0.07 Archaeplastida
Solyc04g076800.3.1 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 Archaeplastida
Solyc08g013850.1.1 No alias RNA editing factor (CRR21) 0.09 Archaeplastida
Solyc11g017370.3.1 No alias RNA editing factor (AEF1) 0.07 Archaeplastida
Zm00001e000301_P001 No alias Pentatricopeptide repeat-containing protein At4g35130,... 0.05 Archaeplastida
Zm00001e002552_P001 No alias RNA editing factor (SEL1/PDM1) 0.04 Archaeplastida
Zm00001e029119_P001 No alias Pentatricopeptide repeat-containing protein At2g33760... 0.02 Archaeplastida
Zm00001e031351_P001 No alias RNA editing factor (ECD1) 0.04 Archaeplastida
Zm00001e032499_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
AMTR_s00031p00067070 No alias Pentatricopeptide repeat-containing protein At5g03800... 0.02 LandPlants
AMTR_s00032p00177680 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 LandPlants
AMTR_s00039p00132380 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g57430,... 0.03 LandPlants
AMTR_s00077p00031710 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g27610... 0.04 LandPlants
AT1G11290 CRR22 Pentatricopeptide repeat (PPR) superfamily protein 0.05 LandPlants
AT2G02980 OTP85 Pentatricopeptide repeat (PPR) superfamily protein 0.02 LandPlants
AT3G57430 OTP84 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 LandPlants
AT5G03800 emb1899, EMB175, EMB166 Pentatricopeptide repeat (PPR) superfamily protein 0.03 LandPlants
AT5G55740 CRR21 Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 LandPlants
AT5G66520 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 LandPlants
GSVIVT01009227001 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.04 LandPlants
GSVIVT01009789001 No alias Pentatricopeptide repeat-containing protein At1g19720... 0.06 LandPlants
GSVIVT01011333001 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.03 LandPlants
GSVIVT01012461001 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 LandPlants
GSVIVT01017365001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 LandPlants
GSVIVT01023971001 No alias Pentatricopeptide repeat-containing protein At4g35130,... 0.03 LandPlants
GSVIVT01031251001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.03 LandPlants
GSVIVT01033190001 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.06 LandPlants
GSVIVT01033389001 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 LandPlants
GSVIVT01033735001 No alias Pentatricopeptide repeat-containing protein At5g03800... 0.02 LandPlants
Gb_03345 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 LandPlants
Gb_08772 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 LandPlants
Gb_11688 No alias OTP70 plastidial RNA splicing factor 0.02 LandPlants
Gb_14867 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 LandPlants
Gb_18015 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.02 LandPlants
Gb_20910 No alias Putative pentatricopeptide repeat-containing protein... 0.02 LandPlants
Gb_21443 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.05 LandPlants
Gb_36806 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.02 LandPlants
LOC_Os01g42280.1 No alias RNA editing factor (CRR21) 0.03 LandPlants
LOC_Os01g62910.1 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.02 LandPlants
LOC_Os04g02850.1 No alias RNA editing factor (OTP84) 0.05 LandPlants
LOC_Os07g07620.1 No alias Pentatricopeptide repeat-containing protein At5g03800... 0.04 LandPlants
LOC_Os11g29230.1 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 LandPlants
MA_16339g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 LandPlants
MA_59599g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 LandPlants
Smo90123 No alias Pentatricopeptide repeat-containing protein At3g22690... 0.02 LandPlants
Solyc01g007850.2.1 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 LandPlants
Solyc02g081900.4.1 No alias RNA editing factor (OTP84) 0.02 LandPlants
Solyc04g076800.3.1 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 LandPlants
Solyc08g013850.1.1 No alias RNA editing factor (CRR21) 0.05 LandPlants
Zm00001e029119_P001 No alias Pentatricopeptide repeat-containing protein At2g33760... 0.02 LandPlants
AMTR_s00031p00067070 No alias Pentatricopeptide repeat-containing protein At5g03800... 0.02 SeedPlants
AMTR_s00032p00177680 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 SeedPlants
AMTR_s00039p00132380 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g57430,... 0.03 SeedPlants
AT1G11290 CRR22 Pentatricopeptide repeat (PPR) superfamily protein 0.04 SeedPlants
AT2G02980 OTP85 Pentatricopeptide repeat (PPR) superfamily protein 0.02 SeedPlants
AT5G03800 emb1899, EMB175, EMB166 Pentatricopeptide repeat (PPR) superfamily protein 0.03 SeedPlants
AT5G55740 CRR21 Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 SeedPlants
GSVIVT01009789001 No alias Pentatricopeptide repeat-containing protein At1g19720... 0.05 SeedPlants
GSVIVT01011333001 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.03 SeedPlants
GSVIVT01012461001 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 SeedPlants
GSVIVT01017365001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 SeedPlants
GSVIVT01023971001 No alias Pentatricopeptide repeat-containing protein At4g35130,... 0.03 SeedPlants
GSVIVT01031251001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.02 SeedPlants
GSVIVT01033190001 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.04 SeedPlants
GSVIVT01033389001 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 SeedPlants
GSVIVT01033735001 No alias Pentatricopeptide repeat-containing protein At5g03800... 0.02 SeedPlants
Gb_03345 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 SeedPlants
Gb_08772 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 SeedPlants
Gb_11688 No alias OTP70 plastidial RNA splicing factor 0.02 SeedPlants
Gb_14867 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 SeedPlants
Gb_20910 No alias Putative pentatricopeptide repeat-containing protein... 0.02 SeedPlants
Gb_21443 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.05 SeedPlants
Gb_33064 No alias RNA editing factor (OTP82) 0.02 SeedPlants
Gb_36806 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.02 SeedPlants
LOC_Os01g42280.1 No alias RNA editing factor (CRR21) 0.03 SeedPlants
LOC_Os01g62910.1 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.02 SeedPlants
LOC_Os04g02850.1 No alias RNA editing factor (OTP84) 0.05 SeedPlants
LOC_Os07g02280.1 No alias RNA editing factor (OTP80) 0.02 SeedPlants
LOC_Os07g07620.1 No alias Pentatricopeptide repeat-containing protein At5g03800... 0.04 SeedPlants
LOC_Os10g39460.2 No alias Putative pentatricopeptide repeat-containing protein... 0.02 SeedPlants
MA_16339g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 SeedPlants
MA_59599g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 SeedPlants
MA_77675g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 SeedPlants
MA_9384g0020 No alias Pentatricopeptide repeat-containing protein At3g49170,... 0.03 SeedPlants
Solyc01g007850.2.1 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 SeedPlants
Solyc01g098150.3.1 No alias Pentatricopeptide repeat-containing protein At5g03800... 0.02 SeedPlants
Solyc02g081900.4.1 No alias RNA editing factor (OTP84) 0.02 SeedPlants
Solyc08g013850.1.1 No alias RNA editing factor (CRR21) 0.05 SeedPlants
Zm00001e000301_P001 No alias Pentatricopeptide repeat-containing protein At4g35130,... 0.02 SeedPlants
Zm00001e029119_P001 No alias Pentatricopeptide repeat-containing protein At2g33760... 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 648 696
IPR002885 Pentatricopeptide_repeat 548 595
IPR002885 Pentatricopeptide_repeat 452 494
IPR002885 Pentatricopeptide_repeat 245 292
IPR002885 Pentatricopeptide_repeat 345 393
IPR002885 Pentatricopeptide_repeat 145 192
IPR002885 Pentatricopeptide_repeat 724 747
IPR002885 Pentatricopeptide_repeat 220 243
IPR002885 Pentatricopeptide_repeat 523 547
IPR002885 Pentatricopeptide_repeat 789 818
IPR002885 Pentatricopeptide_repeat 118 142
IPR032867 DYW_dom 822 946
No external refs found!