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  5. Azfi_s0006.g010500

Azfi_s0006.g010500 (RST1)


Aliases : RST1

Description : regulatory cofactor *(RST1) of exosome complex & original description: CDS=78-5786


Gene families : OG0004554 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004554_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0006.g010500

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00082p00059940 RST1,... Protein RST1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Ceric.12G038700.1 RST1, Ceric.12G038700 regulatory cofactor *(RST1) of exosome complex &... 0.03 OrthoFinder output from all 47 species
Cre01.g010650 No alias No description available 0.03 OrthoFinder output from all 47 species
Dcu_g20670 RST1 regulatory cofactor *(RST1) of exosome complex &... 0.05 OrthoFinder output from all 47 species
GSVIVT01032418001 RST1 Protein RST1 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Gb_07737 RST1 regulatory cofactor (RST1) of exosome complex 0.03 OrthoFinder output from all 47 species
LOC_Os01g07490.1 RST1, LOC_Os01g07490 regulatory cofactor (RST1) of exosome complex 0.03 OrthoFinder output from all 47 species
Mp1g20850.1 RST1 regulatory cofactor (RST1) of exosome complex 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0040.g012444 No alias regulatory cofactor *(RST1) of exosome complex &... 0.04 OrthoFinder output from all 47 species
Sam_g11649 No alias regulatory cofactor *(RST1) of exosome complex &... 0.05 OrthoFinder output from all 47 species
Spa_g09091 RST1 regulatory cofactor *(RST1) of exosome complex &... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
CC GO:0000152 nuclear ubiquitin ligase complex IEP HCCA
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
CC GO:0005680 anaphase-promoting complex IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
CC GO:0035145 exon-exon junction complex IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR022542 FOCAD/RST1_DUF3730 576 806
No external refs found!