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  5. Azfi_s0003.g007779

Azfi_s0003.g007779 (emb1507)


Aliases : emb1507

Description : RNA helicase *(Brr2) & original description: CDS=215-6733


Gene families : OG0001175 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001175_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0003.g007779

Target Alias Description ECC score Gene Family Method Actions
AT5G61140 No alias U5 small nuclear ribonucleoprotein helicase 0.04 OrthoFinder output from all 47 species
Adi_g117139 emb1507 RNA helicase *(Brr2) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g09018 No alias RNA helicase *(Brr2) & original description: none 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000865.27 emb1507 DExH-box ATP-dependent RNA helicase DExH12... 0.02 OrthoFinder output from all 47 species
Ehy_g12876 emb1507 RNA helicase *(Brr2) & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os02g01740.1 emb1507, LOC_Os02g01740 RNA helicase (Brr2) 0.03 OrthoFinder output from all 47 species
Len_g21125 No alias RNA helicase *(Brr2) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05048 emb1507 RNA helicase *(Brr2) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g09106 No alias RNA helicase *(Brr2) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0017.g007145 No alias RNA helicase *(Brr2) & original description: CDS=159-5693 0.03 OrthoFinder output from all 47 species
Sam_g18045 No alias RNA helicase *(Brr2) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 1356 1524
IPR041094 Brr2_helicase_PWI 271 380
IPR004179 Sec63-dom 1009 1311
IPR011545 DEAD/DEAH_box_helicase_dom 510 685
IPR001650 Helicase_C 742 885
IPR004179 Sec63-dom 1842 2160
No external refs found!