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  5. Azfi_s0002.g001173

Azfi_s0002.g001173


Description : not classified & original description: CDS=1-2220


Gene families : OG0005520 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005520_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0002.g001173
Cluster HCCA: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
Dac_g11073 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc06g068280.3.1 Solyc06g068280 DEAD-box ATP-dependent RNA helicase 35 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 430 537
IPR011545 DEAD/DEAH_box_helicase_dom 215 394
No external refs found!