Heatmap: Cluster_3 (HCCA)

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Vegetative Sporophyte
Adult Sporophyte
Leaf (0 mg/L NH4NO3)
Leaf (30 mg/L NH4NO3)
Leaf (90 mg/L NH4NO3)
Sporophyte; w/o NH4NO3, w/o cyanobacteria
Sporophyte; w/o NH4NO3, w cyanobacteria
Sporophyte; w NH4NO3, w cyanobacteria
Sporophyte; w NH4NO3, w/o cyanobacteria
Root Tip, D-3 6h mock treated
Root Tip, D-3 6h 0.1 uM IAA treated
Root Tip, D-3 6h 0.5 uM trans-zeatin treated
Microsporocarp
-0.12 -2.28 -2.52 -1.49 -1.4 0.72 0.71 1.34 0.93 -10.13 -9.19 - 1.7
-0.18 -1.02 -1.78 -1.03 -0.79 0.91 0.45 0.5 0.5 -0.89 -1.15 -1.3 1.48
-0.31 -2.52 -0.03 0.02 0.08 0.25 0.56 0.42 0.55 -0.3 -0.19 -0.39 0.05
0.22 -1.18 -0.89 -0.43 -0.66 0.15 -0.05 0.04 1.0 -0.61 -0.48 -0.65 1.24
-1.35 -5.22 0.2 0.56 0.02 -0.31 -0.55 -0.68 -0.49 -0.76 -0.45 -0.43 2.02
0.13 -2.37 -1.52 -1.36 -1.28 0.52 0.62 0.65 0.54 -0.15 -0.08 -0.22 0.9
-0.43 -2.66 0.16 -0.12 -0.34 0.68 0.66 0.57 0.56 -1.07 -0.82 -0.83 0.61
-0.32 -2.31 -0.65 -0.01 -0.21 0.28 0.5 0.67 0.59 -0.49 -0.53 -0.34 0.67
-0.34 -2.17 -0.58 -0.49 -0.45 0.42 0.67 0.66 0.71 -0.41 -0.25 -0.25 0.38
-1.26 -4.8 - - - -1.59 1.43 1.31 1.37 -2.0 -2.22 -2.39 1.93
0.09 -1.39 0.23 -0.67 -0.62 0.25 0.28 0.09 1.07 -1.04 -1.17 -1.21 1.12
-0.13 -2.04 -1.74 -0.43 -0.75 -0.3 0.24 0.56 0.9 -0.01 -0.33 -0.2 1.15
-0.04 -2.29 -1.35 -1.28 -1.46 0.63 0.78 0.72 0.79 -1.71 -1.6 -1.67 1.61
0.06 -0.35 -0.99 -0.37 -0.51 0.3 0.5 0.42 0.67 -0.31 -0.48 -0.35 0.39
-0.15 -1.95 -1.42 -0.68 -0.91 0.61 0.81 1.04 0.52 -1.03 -1.19 -0.93 1.06
-0.48 -1.05 -0.28 -0.41 -0.05 0.62 0.62 0.62 0.57 -0.45 -0.57 -0.49 0.09
-0.4 -1.57 -0.37 0.03 -0.13 -0.93 0.26 0.21 0.18 -1.47 -1.65 -1.23 2.03
0.04 -0.94 -0.86 -0.02 -0.83 0.73 0.69 0.49 0.78 -1.25 -1.09 -0.88 0.61
-0.73 -2.24 -0.54 -0.38 -0.26 0.53 0.44 0.3 0.6 -0.66 -0.79 -0.86 1.37
-0.19 -3.58 -0.55 -1.05 -0.61 0.34 0.57 0.66 0.54 -0.69 -0.57 -0.64 1.32
0.17 -4.09 - - - 1.54 0.99 1.31 0.62 -2.51 -2.01 -2.96 1.23
-0.3 -2.54 -1.22 -1.0 -1.39 0.56 0.66 0.72 0.57 -0.6 -0.48 -0.53 1.28
0.24 -0.54 -1.91 -1.58 -1.47 0.67 0.51 0.32 0.75 -0.16 -0.34 -0.25 0.76
-0.21 -1.48 -0.14 0.11 0.18 0.46 0.39 0.24 0.7 -1.06 -1.04 -1.0 0.77
0.08 -2.87 -0.15 -0.42 -0.24 -0.42 -0.52 -0.65 -0.31 -0.42 -0.41 -0.41 2.06
0.08 -3.04 -1.02 -1.63 -1.01 0.33 0.56 0.71 0.59 -0.26 -0.39 -0.25 1.14
-0.04 -3.96 -0.74 -1.61 -1.18 1.09 0.99 0.77 0.84 -1.04 -0.92 -0.81 0.49
-0.16 -2.55 -0.27 -0.31 -0.42 0.28 0.59 0.75 0.61 -0.51 -0.45 -0.46 0.55
-0.23 -2.1 -0.81 -0.9 -0.7 0.69 0.54 0.21 0.85 -0.6 -0.62 -0.66 1.16
-0.06 -3.59 -0.98 -0.65 -0.66 0.64 0.68 0.66 0.57 -0.5 -0.51 -0.43 0.86
0.31 -1.89 -1.87 0.18 -0.92 0.91 0.51 -0.06 0.33 -1.44 -1.36 -1.35 1.53
0.02 -2.68 -1.02 -0.48 -0.56 0.56 0.47 0.41 0.71 -0.5 -0.64 -0.73 1.12
-0.24 -1.75 -1.05 -0.99 -0.94 0.33 0.35 0.22 0.52 -0.49 -0.44 -0.44 1.6
-0.18 -1.1 -1.36 -1.29 -1.74 0.65 0.48 0.16 0.86 -0.15 -0.03 -0.05 0.86
-1.16 - -0.05 -0.09 0.2 -0.55 -0.23 0.14 -0.04 -1.0 -0.83 -0.57 2.06
-0.54 -3.55 -0.39 -0.11 -0.21 -0.57 -0.49 -0.35 -0.35 0.03 0.19 0.07 1.81
-0.33 -2.98 -0.74 -0.07 -0.22 0.69 0.85 0.52 1.02 -0.9 -0.99 -1.03 0.34
-0.53 -3.94 -0.38 -0.35 -0.19 0.0 -0.03 -0.11 0.07 -0.15 -0.17 -0.1 1.65
-0.3 -4.3 -1.66 -1.31 -0.59 0.1 0.48 0.5 0.32 0.25 0.24 0.31 1.01
0.28 -2.91 -2.06 -1.14 -0.89 0.3 0.86 1.22 1.1 -2.17 -1.97 -1.93 1.12
-0.4 -4.11 -0.07 -0.19 0.13 0.38 0.71 0.62 0.46 -0.4 -0.19 -0.24 -0.1
-0.38 - - - - 1.75 0.33 0.52 0.32 -0.98 -0.34 -0.72 1.6
0.31 -0.88 -6.34 - -6.38 0.43 0.32 0.11 0.27 0.24 0.3 0.34 1.4
-0.95 -1.33 -0.51 -0.05 0.04 0.2 0.04 0.2 0.33 -1.17 -0.81 -0.93 1.71
0.02 -3.57 -1.79 - - 0.05 -0.25 -0.37 0.04 -0.02 0.12 0.5 2.15
0.02 -2.08 -0.49 0.26 0.08 0.11 0.58 0.74 0.63 -1.05 -0.81 -0.54 0.33
-0.09 -1.57 -0.67 -0.19 -0.4 0.11 0.5 0.67 0.51 -0.5 -0.37 -0.24 0.71
-0.24 -0.54 -0.7 -0.44 -0.47 0.11 0.41 0.58 0.46 -0.51 -0.67 -0.75 1.13
-0.28 -1.99 0.27 0.27 -0.35 0.22 0.38 0.49 0.51 -0.43 -0.38 -0.36 0.2
-0.15 -1.01 -0.78 -0.75 -1.14 0.76 0.73 0.7 1.01 -1.92 -1.91 -1.61 1.07
-0.49 -0.63 -0.99 -1.05 -0.43 0.5 0.28 0.06 0.43 0.06 0.07 0.21 0.71
0.11 - - -2.23 - 1.26 0.97 1.2 1.15 -3.3 -1.75 -1.89 1.12
-0.18 -3.59 0.18 0.14 -0.03 0.09 0.12 0.11 0.52 -0.7 -0.47 -0.82 1.17
-0.33 -1.65 -1.55 -2.08 -1.61 0.85 0.49 0.02 0.84 -1.21 -1.29 -1.14 1.88
0.01 -3.15 -0.86 0.44 -0.42 -0.71 -0.38 -0.7 -0.71 -0.16 -0.42 -0.3 2.06
-0.02 -1.43 -0.53 -0.33 -0.01 0.76 0.44 0.36 0.69 -0.91 -0.73 -0.71 0.56
-0.9 -0.83 -1.18 -1.16 -0.86 -0.63 -0.83 -1.11 -0.8 0.16 0.29 0.07 2.27
-0.17 -1.75 -2.19 -0.99 -1.67 -0.96 0.7 0.6 1.29 -0.88 -0.95 -0.79 1.61
-0.6 -2.69 -4.54 -5.22 -4.7 1.58 1.45 0.85 0.44 -6.75 -6.38 -7.14 1.67
-0.61 -2.77 -1.74 -0.97 -1.79 0.58 0.59 0.33 0.82 -0.3 -0.42 -0.22 1.41
-0.59 -2.06 0.07 -0.12 0.22 -0.21 -0.41 -0.81 -0.32 -0.54 -0.49 -0.66 1.98
-0.53 -2.48 -1.2 -1.04 -0.85 0.54 0.78 0.62 0.79 0.11 -0.02 0.11 0.08
-0.34 -1.34 -0.57 -0.48 -0.15 -0.42 -0.37 -0.62 -0.22 0.31 0.28 0.46 1.41
-1.38 - - - - 2.15 0.76 0.9 - - - - 2.21
-0.41 -5.35 -1.1 -0.07 -1.21 -0.12 0.76 0.76 0.88 -0.65 -0.5 -0.63 1.16
-0.41 -6.0 - - - 0.85 -0.4 0.13 0.9 0.29 0.16 0.62 1.5
-0.05 -2.05 -0.74 0.02 -0.4 0.15 0.26 0.3 0.61 -0.4 -0.38 -0.28 1.0
-0.2 -2.67 -0.37 -0.13 -0.14 0.4 0.44 0.36 0.49 -0.3 -0.24 -0.32 0.63
-0.75 -2.1 -0.86 -0.79 -0.53 0.16 0.23 0.38 0.45 0.03 0.2 0.03 1.14
-0.55 -0.84 -0.86 -0.33 -0.28 0.6 0.75 0.6 0.37 -0.24 -0.15 -0.24 0.0
-0.04 -2.38 -2.09 -1.97 -2.16 0.44 0.45 0.42 0.66 0.25 0.09 0.15 1.09
-0.5 - -1.51 -1.63 -0.27 -0.1 1.09 0.85 -0.11 -2.08 - - 2.25
-0.3 -1.63 -0.52 0.13 -0.41 0.07 0.09 0.36 0.41 -0.28 -0.28 -0.23 1.06
0.33 -0.22 -1.55 -0.95 -1.29 0.38 0.53 0.64 0.71 -0.3 -0.66 -0.28 0.5
-0.35 -0.93 -0.6 -0.27 -0.59 0.25 0.58 0.49 0.64 -0.06 -0.13 -0.19 0.2
0.26 -2.18 - - - -0.01 0.33 0.39 0.47 0.51 0.27 0.63 1.29
-0.74 -0.21 -1.01 -1.28 -0.93 0.52 0.66 0.83 0.77 -1.57 -1.53 -1.46 1.36
-0.26 -1.62 -0.77 -0.51 -0.57 0.44 0.69 0.57 0.72 -0.25 -0.28 -0.06 0.21

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.