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  5. Azfi_s0001.g000558

Azfi_s0001.g000558


Description : component *(uS9m) of small mitoribosomal-subunit proteome & original description: CDS=178-1461


Gene families : OG0002624 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002624_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0001.g000558
Cluster HCCA: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00218530 evm_27.TU.AmTr_v1... Protein biosynthesis.organelle translation... 0.05 OrthoFinder output from all 47 species
AT3G49080 No alias Ribosomal protein S5 domain 2-like superfamily protein 0.03 OrthoFinder output from all 47 species
Als_g08459 No alias component *(uS9m) of small mitoribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Ceric.09G015900.1 Ceric.09G015900 component *(uS9m) of small mitoribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Dac_g00767 No alias component *(uS9m) of small mitoribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Gb_37974 No alias component mtRPS9 of small ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species
LOC_Os07g46440.1 LOC_Os07g46440 component mtRPS9 of small ribosomal subunit proteome 0.06 OrthoFinder output from all 47 species
Len_g11641 No alias component *(uS9m) of small mitoribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Msp_g09895 No alias component *(uS9m) of small mitoribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Sam_g11187 No alias component *(uS9m) of small mitoribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Solyc10g080160.2.1 Solyc10g080160 component mtRPS9 of small ribosomal subunit proteome 0.02 OrthoFinder output from all 47 species
Spa_g11562 No alias component *(uS9m) of small mitoribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Zm00001e035755_P001 Zm00001e035755 component mtRPS9 of small ribosomal subunit proteome 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003909 DNA ligase activity IEP HCCA
MF GO:0003910 DNA ligase (ATP) activity IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP HCCA
BP GO:0032392 DNA geometric change IEP HCCA
BP GO:0032508 DNA duplex unwinding IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR000754 Ribosomal_S9 307 427
No external refs found!