- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : Ceric.39G057500
Description : component *(MPE1) of Cleavage and Polyadenylation Specificity Factor (CPSF) complex & original description: pacid=50582564 polypeptide=Ceric.39G057500.1.p locus=Ceric.39G057500 ID=Ceric.39G057500.1.v2.1 annot-version=v2.1
Gene families : OG0001168 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001168_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT5G47430 | No alias | DWNN domain, a CCHC-type zinc finger | 0.08 | OrthoFinder output from all 47 species | |
| Aev_g21685 | No alias | component *(MPE1) of Cleavage and Polyadenylation... | 0.02 | OrthoFinder output from all 47 species | |
| Als_g20650 | No alias | component *(MPE1) of Cleavage and Polyadenylation... | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g11290 | No alias | component *(MPE1) of Cleavage and Polyadenylation... | 0.05 | OrthoFinder output from all 47 species | |
| Aspi01Gene24993.t2 | Aspi01Gene24993 | component *(MPE1) of Cleavage and Polyadenylation... | 0.04 | OrthoFinder output from all 47 species | |
| Azfi_s0466.g072795 | No alias | component *(MPE1) of Cleavage and Polyadenylation... | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g32528 | No alias | component *(MPE1) of Cleavage and Polyadenylation... | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g06496 | No alias | component *(MPE1) of Cleavage and Polyadenylation... | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g12334 | No alias | component *(MPE1) of Cleavage and Polyadenylation... | 0.05 | OrthoFinder output from all 47 species | |
| Ehy_g07907 | No alias | component *(MPE1) of Cleavage and Polyadenylation... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01035456001 | No alias | E3 ubiquitin ligase PARAQUAT TOLERANCE 3 OS=Arabidopsis thaliana | 0.04 | OrthoFinder output from all 47 species | |
| Gb_27645 | No alias | component MPE1 of Cleavage and Polyadenylation... | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os10g29560.1 | LOC_Os10g29560 | component MPE1 of Cleavage and Polyadenylation... | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g38659 | No alias | component *(MPE1) of Cleavage and Polyadenylation... | 0.03 | OrthoFinder output from all 47 species | |
| MA_10554g0010 | No alias | component MPE1 of Cleavage and Polyadenylation... | 0.03 | OrthoFinder output from all 47 species | |
| Mp2g17650.1 | No alias | component MPE1 of Cleavage and Polyadenylation... | 0.02 | OrthoFinder output from all 47 species | |
| Nbi_g29378 | No alias | component *(MPE1) of Cleavage and Polyadenylation... | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g26290 | No alias | component *(MPE1) of Cleavage and Polyadenylation... | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g05416 | No alias | component *(MPE1) of Cleavage and Polyadenylation... | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g05925 | No alias | component *(MPE1) of Cleavage and Polyadenylation... | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g17748 | No alias | component *(MPE1) of Cleavage and Polyadenylation... | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g39118 | No alias | component *(MPE1) of Cleavage and Polyadenylation... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc10g083150.3.1 | Solyc10g083150 | component MPE1 of Cleavage and Polyadenylation... | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g10359 | No alias | component *(MPE1) of Cleavage and Polyadenylation... | 0.06 | OrthoFinder output from all 47 species | |
| Tin_g09334 | No alias | component *(MPE1) of Cleavage and Polyadenylation... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e004737_P002 | Zm00001e004737 | component MPE1 of Cleavage and Polyadenylation... | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0004176 | ATP-dependent peptidase activity | IEP | HCCA |
| MF | GO:0004222 | metalloendopeptidase activity | IEP | HCCA |
| MF | GO:0004519 | endonuclease activity | IEP | HCCA |
| MF | GO:0004521 | endoribonuclease activity | IEP | HCCA |
| MF | GO:0004525 | ribonuclease III activity | IEP | HCCA |
| MF | GO:0004540 | ribonuclease activity | IEP | HCCA |
| MF | GO:0004843 | cysteine-type deubiquitinase activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| MF | GO:0005515 | protein binding | IEP | HCCA |
| BP | GO:0006508 | proteolysis | IEP | HCCA |
| BP | GO:0006888 | endoplasmic reticulum to Golgi vesicle-mediated transport | IEP | HCCA |
| MF | GO:0008233 | peptidase activity | IEP | HCCA |
| MF | GO:0008234 | cysteine-type peptidase activity | IEP | HCCA |
| MF | GO:0008237 | metallopeptidase activity | IEP | HCCA |
| MF | GO:0008270 | zinc ion binding | IEP | HCCA |
| MF | GO:0016462 | pyrophosphatase activity | IEP | HCCA |
| BP | GO:0016579 | protein deubiquitination | IEP | HCCA |
| MF | GO:0016787 | hydrolase activity | IEP | HCCA |
| MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | HCCA |
| MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | HCCA |
| MF | GO:0016891 | endoribonuclease activity, producing 5'-phosphomonoesters | IEP | HCCA |
| MF | GO:0016893 | endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | IEP | HCCA |
| MF | GO:0017111 | ribonucleoside triphosphate phosphatase activity | IEP | HCCA |
| MF | GO:0019783 | ubiquitin-like protein peptidase activity | IEP | HCCA |
| CC | GO:0030117 | membrane coat | IEP | HCCA |
| CC | GO:0030120 | vesicle coat | IEP | HCCA |
| CC | GO:0030127 | COPII vesicle coat | IEP | HCCA |
| CC | GO:0031011 | Ino80 complex | IEP | HCCA |
| MF | GO:0032296 | double-stranded RNA-specific ribonuclease activity | IEP | HCCA |
| CC | GO:0032991 | protein-containing complex | IEP | HCCA |
| MF | GO:0046914 | transition metal ion binding | IEP | HCCA |
| BP | GO:0048193 | Golgi vesicle transport | IEP | HCCA |
| CC | GO:0070603 | SWI/SNF superfamily-type complex | IEP | HCCA |
| BP | GO:0070646 | protein modification by small protein removal | IEP | HCCA |
| CC | GO:0097346 | INO80-type complex | IEP | HCCA |
| MF | GO:0101005 | deubiquitinase activity | IEP | HCCA |
| CC | GO:1904949 | ATPase complex | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR025829 | Zn_knuckle_CX2CX3GHX4C | 118 | 136 |
| No external refs found! |