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  5. Ceric.38G010200.1

Ceric.38G010200.1 (RPOC2, Ceric.38G010200)


Aliases : RPOC2, Ceric.38G010200

Description : not classified & original description: pacid=50579905 polypeptide=Ceric.38G010200.1.p locus=Ceric.38G010200 ID=Ceric.38G010200.1.v2.1 annot-version=v2.1


Gene families : OG0004582 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004582_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.38G010200.1
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00028p00130230 RPOC2,... DNA-directed RNA polymerase subunit beta OS=Amborella trichopoda 0.08 OrthoFinder output from all 47 species
AMTR_s00390p00012910 RPOC2,... Protein biosynthesis.organelle translation... 0.08 OrthoFinder output from all 47 species
ATCG00170 RPOC2 DNA-directed RNA polymerase family protein 0.36 OrthoFinder output from all 47 species
Aev_g15088 RPOC2 core component *(RpoC2) of plastid-encoded RNA... 0.37 OrthoFinder output from all 47 species
Ceric.02G012700.1 RPOC2, Ceric.02G012700 core component *(RpoC2) of plastid-encoded RNA... 0.13 OrthoFinder output from all 47 species
Ceric.02G016600.1 RPOC2, Ceric.02G016600 core component *(RpoC2) of plastid-encoded RNA... 0.04 OrthoFinder output from all 47 species
Ceric.29G004900.1 RPOC2, Ceric.29G004900 core component *(RpoC2) of plastid-encoded RNA... 0.16 OrthoFinder output from all 47 species
GSVIVT01017094001 RPOC2 DNA-directed RNA polymerase subunit beta OS=Vitis vinifera 0.03 OrthoFinder output from all 47 species
GSVIVT01019173001 RPOC2 DNA-directed RNA polymerase subunit beta OS=Vitis vinifera 0.05 OrthoFinder output from all 47 species
Gb_02726 RPOC2 DNA-directed RNA polymerase subunit beta OS=Cycas... 0.12 OrthoFinder output from all 47 species
Gb_09031 RPOC2 DNA-directed RNA polymerase subunit beta OS=Cycas... 0.12 OrthoFinder output from all 47 species
Gb_09032 RPOC2 DNA-directed RNA polymerase subunit beta OS=Pinus... 0.11 OrthoFinder output from all 47 species
Gb_09773 RPOC2 DNA-directed RNA polymerase subunit beta OS=Cycas... 0.04 OrthoFinder output from all 47 species
Gb_10415 RPOC2 DNA-directed RNA polymerase subunit beta OS=Pinus... 0.1 OrthoFinder output from all 47 species
Gb_26285 RPOC2 DNA-directed RNA polymerase subunit beta OS=Cycas... 0.12 OrthoFinder output from all 47 species
LOC_Os04g16830.1 RPOC2, LOC_Os04g16830 DNA-directed RNA polymerase subunit beta OS=Oryza sativa... 0.28 OrthoFinder output from all 47 species
Mp1g00060.1 RPOC2 RpoC2 core component plastid-encoded RNA polymerase 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0533.g027467 RPOC2 not classified & original description: CDS=1-840 0.12 OrthoFinder output from all 47 species
Sacu_v1.1_s0533.g027468 RPOC2 not classified & original description: CDS=1-702 0.13 OrthoFinder output from all 47 species
Solyc00g500052.1.1 RPOC2, Solyc00g500052 RpoC1 core component plastid-encoded RNA polymerase.... 0.17 OrthoFinder output from all 47 species
Solyc00g500135.1.1 RPOC2, Solyc00g500135 RpoC1 core component plastid-encoded RNA polymerase.... 0.17 OrthoFinder output from all 47 species
Solyc00g500205.1.1 RPOC2, Solyc00g500205 RpoC1 core component plastid-encoded RNA polymerase.... 0.17 OrthoFinder output from all 47 species
Solyc00g500290.1.1 RPOC2, Solyc00g500290 RpoC2 core component plastid-encoded RNA polymerase 0.06 OrthoFinder output from all 47 species
Solyc01g056840.1.1 RPOC2, Solyc01g056840 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Zm00001e042060_P001 RPOC2, Zm00001e042060 RpoC2 core component plastid-encoded RNA polymerase 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004129 cytochrome-c oxidase activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006754 ATP biosynthetic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009060 aerobic respiration IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
CC GO:0009579 thylakoid IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0015453 oxidoreduction-driven active transmembrane transporter activity IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0015980 energy derivation by oxidation of organic compounds IEP HCCA
BP GO:0015986 proton motive force-driven ATP synthesis IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016675 oxidoreductase activity, acting on a heme group of donors IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
MF GO:0020037 heme binding IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
MF GO:0022853 active monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP HCCA
BP GO:0045333 cellular respiration IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1902600 proton transmembrane transport IEP HCCA

No InterPro domains available for this sequence

No external refs found!