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  5. Ceric.36G020800.1

Ceric.36G020800.1 (IMP4, Ceric.36G020800)


Aliases : IMP4, Ceric.36G020800

Description : SSU processome assembly factor *(IMP4) & original description: pacid=50569153 polypeptide=Ceric.36G020800.1.p locus=Ceric.36G020800 ID=Ceric.36G020800.1.v2.1 annot-version=v2.1


Gene families : OG0006971 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006971_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.36G020800.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00101p00134540 IMP4,... Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder output from all 47 species
AT1G63780 IMP4 Ribosomal RNA processing Brix domain protein 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020848.22 IMP4 Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
Mp2g04740.1 IMP4 SSU processome assembly factor (IMP4) 0.04 OrthoFinder output from all 47 species
Sam_g06574 No alias SSU processome assembly factor *(IMP4) & original... 0.02 OrthoFinder output from all 47 species
Sam_g38548 No alias SSU processome assembly factor *(IMP4) & original... 0.04 OrthoFinder output from all 47 species
Solyc01g007250.4.1 IMP4, Solyc01g007250 SSU processome assembly factor (IMP4) 0.02 OrthoFinder output from all 47 species
Tin_g44911 IMP4 SSU processome assembly factor *(IMP4) & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006364 rRNA processing IEA Interproscan
MF GO:0019843 rRNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000149 SNARE binding IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0019905 syntaxin binding IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR007109 Brix 112 282
No external refs found!