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  5. Ceric.34G019900.1

Ceric.34G019900.1 (ATUPF3, UPF3, Ceric.34G019900)


Aliases : ATUPF3, UPF3, Ceric.34G019900

Description : component *(UPF3) of RNA quality control Exon Junction complex & original description: pacid=50624064 polypeptide=Ceric.34G019900.1.p locus=Ceric.34G019900 ID=Ceric.34G019900.1.v2.1 annot-version=v2.1


Gene families : OG0002175 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002175_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.34G019900.1
Cluster HCCA: Cluster_129

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00071p00188270 ATUPF3, UPF3,... RNA processing.RNA quality control Exon Junction complex... 0.04 OrthoFinder output from all 47 species
AT1G33980 ATUPF3, UPF3 Smg-4/UPF3 family protein 0.05 OrthoFinder output from all 47 species
Adi_g019348 ATUPF3, UPF3 component *(UPF3) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Adi_g074753 ATUPF3, UPF3 component *(UPF3) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Aev_g11732 ATUPF3, UPF3 component *(UPF3) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Aev_g21603 ATUPF3, UPF3 component *(UPF3) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Ala_g05619 ATUPF3, UPF3 component *(UPF3) of RNA quality control Exon Junction... 0.05 OrthoFinder output from all 47 species
Aspi01Gene44741.t1 ATUPF3, UPF3,... component *(UPF3) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Azfi_s0008.g011480 ATUPF3, UPF3 component *(UPF3) of RNA quality control Exon Junction... 0.05 OrthoFinder output from all 47 species
Cba_g27966 ATUPF3, UPF3 component *(UPF3) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Cba_g38478 ATUPF3, UPF3 component *(UPF3) of RNA quality control Exon Junction... 0.06 OrthoFinder output from all 47 species
Cre12.g488100 ATUPF3, UPF3 RNA processing.RNA quality control Exon Junction complex... 0.02 OrthoFinder output from all 47 species
Dac_g01686 ATUPF3, UPF3 component *(UPF3) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Dac_g15359 ATUPF3, UPF3 component *(UPF3) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Dcu_g04069 ATUPF3, UPF3 component *(UPF3) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
GSVIVT01023232001 ATUPF3, UPF3 RNA processing.RNA quality control Exon Junction complex... 0.05 OrthoFinder output from all 47 species
Gb_30577 ATUPF3, UPF3 component UPF3 of RNA quality control Exon Junction complex 0.03 OrthoFinder output from all 47 species
LOC_Os04g35920.2 ATUPF3, UPF3,... component UPF3 of RNA quality control Exon Junction complex 0.08 OrthoFinder output from all 47 species
Len_g07302 ATUPF3, UPF3 component *(UPF3) of RNA quality control Exon Junction... 0.09 OrthoFinder output from all 47 species
Len_g22104 ATUPF3, UPF3 component *(UPF3) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
MA_102917g0010 ATUPF3, UPF3 component UPF3 of RNA quality control Exon Junction complex 0.05 OrthoFinder output from all 47 species
MA_16066g0030 ATUPF3, UPF3 component UPF3 of RNA quality control Exon Junction complex 0.02 OrthoFinder output from all 47 species
Msp_g06102 ATUPF3, UPF3 component *(UPF3) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Ore_g26306 ATUPF3, UPF3 component *(UPF3) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Sam_g27087 No alias component *(UPF3) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Solyc01g103420.4.1 ATUPF3, UPF3,... component UPF3 of RNA quality control Exon Junction complex 0.03 OrthoFinder output from all 47 species
Solyc10g044450.3.1 ATUPF3, UPF3,... component UPF3 of RNA quality control Exon Junction complex 0.03 OrthoFinder output from all 47 species
Tin_g12324 ATUPF3, UPF3 component *(UPF3) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Zm00001e008047_P001 ATUPF3, UPF3,... component UPF3 of RNA quality control Exon Junction complex 0.07 OrthoFinder output from all 47 species
Zm00001e040916_P004 ATUPF3, UPF3,... component UPF3 of RNA quality control Exon Junction complex 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004525 ribonuclease III activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004652 polynucleotide adenylyltransferase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043631 RNA polyadenylation IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0070566 adenylyltransferase activity IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR005120 UPF3_dom 80 245
No external refs found!