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  5. Ceric.32G060700.1

Ceric.32G060700.1 (RPOC2, Ceric.32G060700)


Aliases : RPOC2, Ceric.32G060700

Description : not classified & original description: pacid=50597350 polypeptide=Ceric.32G060700.1.p locus=Ceric.32G060700 ID=Ceric.32G060700.1.v2.1 annot-version=v2.1


Gene families : OG0004582 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004582_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.32G060700.1
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00028p00130230 RPOC2,... DNA-directed RNA polymerase subunit beta OS=Amborella trichopoda 0.09 OrthoFinder output from all 47 species
AMTR_s00390p00012910 RPOC2,... Protein biosynthesis.organelle translation... 0.09 OrthoFinder output from all 47 species
ATCG00170 RPOC2 DNA-directed RNA polymerase family protein 0.22 OrthoFinder output from all 47 species
Aev_g15088 RPOC2 core component *(RpoC2) of plastid-encoded RNA... 0.3 OrthoFinder output from all 47 species
Ceric.02G012700.1 RPOC2, Ceric.02G012700 core component *(RpoC2) of plastid-encoded RNA... 0.08 OrthoFinder output from all 47 species
Ceric.02G016600.1 RPOC2, Ceric.02G016600 core component *(RpoC2) of plastid-encoded RNA... 0.04 OrthoFinder output from all 47 species
Ceric.29G004900.1 RPOC2, Ceric.29G004900 core component *(RpoC2) of plastid-encoded RNA... 0.11 OrthoFinder output from all 47 species
GSVIVT01017094001 RPOC2 DNA-directed RNA polymerase subunit beta OS=Vitis vinifera 0.04 OrthoFinder output from all 47 species
GSVIVT01019173001 RPOC2 DNA-directed RNA polymerase subunit beta OS=Vitis vinifera 0.05 OrthoFinder output from all 47 species
GSVIVT01021669001 RPOC2 No description available 0.04 OrthoFinder output from all 47 species
GSVIVT01030958001 No alias DNA-directed RNA polymerase subunit beta OS=Vitis vinifera 0.04 OrthoFinder output from all 47 species
GSVIVT01032753001 RPOC2 DNA-directed RNA polymerase subunit beta OS=Vitis vinifera 0.04 OrthoFinder output from all 47 species
Gb_02726 RPOC2 DNA-directed RNA polymerase subunit beta OS=Cycas... 0.04 OrthoFinder output from all 47 species
Gb_09031 RPOC2 DNA-directed RNA polymerase subunit beta OS=Cycas... 0.05 OrthoFinder output from all 47 species
Gb_09032 RPOC2 DNA-directed RNA polymerase subunit beta OS=Pinus... 0.09 OrthoFinder output from all 47 species
Gb_10415 RPOC2 DNA-directed RNA polymerase subunit beta OS=Pinus... 0.06 OrthoFinder output from all 47 species
Gb_26285 RPOC2 DNA-directed RNA polymerase subunit beta OS=Cycas... 0.06 OrthoFinder output from all 47 species
LOC_Os04g16830.1 RPOC2, LOC_Os04g16830 DNA-directed RNA polymerase subunit beta OS=Oryza sativa... 0.19 OrthoFinder output from all 47 species
Mp1g00060.1 RPOC2 RpoC2 core component plastid-encoded RNA polymerase 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0533.g027467 RPOC2 not classified & original description: CDS=1-840 0.12 OrthoFinder output from all 47 species
Sacu_v1.1_s0533.g027468 RPOC2 not classified & original description: CDS=1-702 0.12 OrthoFinder output from all 47 species
Solyc00g500052.1.1 RPOC2, Solyc00g500052 RpoC1 core component plastid-encoded RNA polymerase.... 0.13 OrthoFinder output from all 47 species
Solyc00g500135.1.1 RPOC2, Solyc00g500135 RpoC1 core component plastid-encoded RNA polymerase.... 0.13 OrthoFinder output from all 47 species
Solyc00g500205.1.1 RPOC2, Solyc00g500205 RpoC1 core component plastid-encoded RNA polymerase.... 0.13 OrthoFinder output from all 47 species
Solyc00g500290.1.1 RPOC2, Solyc00g500290 RpoC2 core component plastid-encoded RNA polymerase 0.06 OrthoFinder output from all 47 species
Solyc01g056840.1.1 RPOC2, Solyc01g056840 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Solyc11g007260.1.1 RPOC2, Solyc11g007260 DNA-directed RNA polymerase subunit beta OS=Solanum... 0.04 OrthoFinder output from all 47 species
Zm00001e042060_P001 RPOC2, Zm00001e042060 RpoC2 core component plastid-encoded RNA polymerase 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006754 ATP biosynthetic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
BP GO:0015986 proton motive force-driven ATP synthesis IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0016984 ribulose-bisphosphate carboxylase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!