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  5. Ceric.29G061100.1

Ceric.29G061100.1 (Ceric.29G061100)


Aliases : Ceric.29G061100

Description : XRN4-exoribonuclease cofactor *(LARP1) & original description: pacid=50625477 polypeptide=Ceric.29G061100.1.p locus=Ceric.29G061100 ID=Ceric.29G061100.1.v2.1 annot-version=v2.1


Gene families : OG0000608 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000608_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.29G061100.1
Cluster HCCA: Cluster_81

Target Alias Description ECC score Gene Family Method Actions
Adi_g019211 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g107381 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.03 OrthoFinder output from all 47 species
Adi_g111867 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g38233 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.02 OrthoFinder output from all 47 species
Ala_g02674 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.04 OrthoFinder output from all 47 species
Ala_g04484 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g26663 No alias not classified & original description: none 0.11 OrthoFinder output from all 47 species
Als_g38803 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.02 OrthoFinder output from all 47 species
Aob_g14550 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.05 OrthoFinder output from all 47 species
Aob_g16006 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g02092 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g06975 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.06 OrthoFinder output from all 47 species
Aspi01Gene43520.t1 Aspi01Gene43520 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0006.g009780 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0028.g023845 No alias not classified & original description: CDS=130-1884 0.02 OrthoFinder output from all 47 species
Ceric.21G054000.1 Ceric.21G054000 not classified & original description: pacid=50603730... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000498.93 No alias No description available 0.02 OrthoFinder output from all 47 species
Dcu_g05816 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.1 OrthoFinder output from all 47 species
Dcu_g19294 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Dcu_g19632 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g07929 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.06 OrthoFinder output from all 47 species
Ehy_g07940 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.04 OrthoFinder output from all 47 species
GSVIVT01029892001 No alias RNA processing.RNA decay.deadenylation-dependent... 0.03 OrthoFinder output from all 47 species
Gb_04152 No alias La-related protein 1C OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Gb_28833 No alias XRN4-exoribonuclease cofactor (LARP1) 0.03 OrthoFinder output from all 47 species
LOC_Os01g16110.1 LOC_Os01g16110 XRN4-exoribonuclease cofactor (LARP1) 0.04 OrthoFinder output from all 47 species
Lfl_g02117 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
MA_1763g0010 No alias La-related protein 1A OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Msp_g15347 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.03 OrthoFinder output from all 47 species
Ore_g19204 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g44181 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.02 OrthoFinder output from all 47 species
Pir_g10955 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.03 OrthoFinder output from all 47 species
Sam_g13658 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.05 OrthoFinder output from all 47 species
Sam_g27548 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Solyc04g081820.3.1 Solyc04g081820 La-related protein 1C OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Spa_g02549 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g50019 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g46280 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.07 OrthoFinder output from all 47 species
Zm00001e025537_P001 Zm00001e025537 XRN4-exoribonuclease cofactor (LARP1) 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0034450 ubiquitin-ubiquitin ligase activity IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR006630 La_HTH 461 517
No external refs found!