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  5. Ceric.29G004800.1

Ceric.29G004800.1 (RPOC1, Ceric.29G004800)


Aliases : RPOC1, Ceric.29G004800

Description : core component *(RpoC1) of plastid-encoded RNA polymerase & original description: pacid=50625089 polypeptide=Ceric.29G004800.1.p locus=Ceric.29G004800 ID=Ceric.29G004800.1.v2.1 annot-version=v2.1


Gene families : OG0006500 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006500_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.29G004800.1
Cluster HCCA: Cluster_98

Target Alias Description ECC score Gene Family Method Actions
ATCG00180 RPOC1 DNA-directed RNA polymerase family protein 0.12 OrthoFinder output from all 47 species
Aev_g25869 RPOC1 core component *(RpoC1) of plastid-encoded RNA... 0.11 OrthoFinder output from all 47 species
Cba_g01180 RPOC1 core component *(RpoC1) of plastid-encoded RNA... 0.04 OrthoFinder output from all 47 species
Ceric.29G004700.1 RPOC1, Ceric.29G004700 not classified & original description: pacid=50625659... 0.08 OrthoFinder output from all 47 species
Gb_39909 RPOC1 RpoC1 core component plastid-encoded RNA polymerase 0.04 OrthoFinder output from all 47 species
Pir_g09480 RPOC1 core component *(RpoC1) of plastid-encoded RNA... 0.08 OrthoFinder output from all 47 species
Sacu_v1.1_s0533.g027469 No alias not classified & original description: CDS=1-663 0.08 OrthoFinder output from all 47 species
Sacu_v1.1_s0533.g027470 RPOC1 not classified & original description: CDS=1-777 0.08 OrthoFinder output from all 47 species
Solyc01g017370.2.1 RPOC1, Solyc01g017370 DNA-directed RNA polymerase subunit beta OS=Nicotiana... 0.04 OrthoFinder output from all 47 species
Solyc01g017470.3.1 RPOC1, Solyc01g017470 DNA-directed RNA polymerase subunit beta OS=Solanum... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
CC GO:0009521 photosystem IEP HCCA
BP GO:0009767 photosynthetic electron transport chain IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0015977 carbon fixation IEP HCCA
MF GO:0016168 chlorophyll binding IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0016984 ribulose-bisphosphate carboxylase activity IEP HCCA
BP GO:0019684 photosynthesis, light reaction IEP HCCA
BP GO:0022900 electron transport chain IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030126 COPI vesicle coat IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
InterPro domains Description Start Stop
IPR000722 RNA_pol_asu 110 152
IPR000722 RNA_pol_asu 174 250
IPR007080 RNA_pol_Rpb1_1 1 108
No external refs found!