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  5. Ceric.26G002400.1

Ceric.26G002400.1 (Ceric.26G002400)


Aliases : Ceric.26G002400

Description : RsmD-type rRNA methyltransferase & original description: pacid=50599470 polypeptide=Ceric.26G002400.1.p locus=Ceric.26G002400 ID=Ceric.26G002400.1.v2.1 annot-version=v2.1


Gene families : OG0005430 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005430_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.26G002400.1
Cluster HCCA: Cluster_131

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00240660 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
Cba_g49529 No alias RsmD-type rRNA methyltransferase & original description: none 0.01 OrthoFinder output from all 47 species
Dac_g29170 No alias RsmD-type rRNA methyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g14054 No alias RsmD-type rRNA methyltransferase & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g29421 No alias RsmD-type rRNA methyltransferase & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01032566001 No alias No description available 0.01 OrthoFinder output from all 47 species
LOC_Os03g52640.2 LOC_Os03g52640 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Lfl_g01027 No alias RsmD-type rRNA methyltransferase & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g10432 No alias RsmD-type rRNA methyltransferase & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g10244 No alias RsmD-type rRNA methyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g18752 No alias RsmD-type rRNA methyltransferase & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g19713 No alias RsmD-type rRNA methyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Solyc02g067540.3.1 Solyc02g067540 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Spa_g14928 No alias RsmD-type rRNA methyltransferase & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003747 translation release factor activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004177 aminopeptidase activity IEP HCCA
MF GO:0004425 indole-3-glycerol-phosphate synthase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006415 translational termination IEP HCCA
MF GO:0008079 translation termination factor activity IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0022411 cellular component disassembly IEP HCCA
BP GO:0032984 protein-containing complex disassembly IEP HCCA
MF GO:0042586 peptide deformylase activity IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA

No InterPro domains available for this sequence

No external refs found!