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  5. Ceric.23G081300.1

Ceric.23G081300.1 (PSBD, Ceric.23G081300)


Aliases : PSBD, Ceric.23G081300

Description : component *(PsbD/D2) of PS-II reaction center complex & original description: pacid=50610307 polypeptide=Ceric.23G081300.1.p locus=Ceric.23G081300 ID=Ceric.23G081300.1.v2.1 annot-version=v2.1


Gene families : OG0001107 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001107_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.23G081300.1
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00270980 PSBA Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.05 OrthoFinder output from all 47 species
AMTR_s00071p00011330 PSBA Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.05 OrthoFinder output from all 47 species
AMTR_s00102p00106890 PSBD,... Photosystem II D2 protein OS=Amborella trichopoda 0.05 OrthoFinder output from all 47 species
AMTR_s00172p00027480 PSBA Photosystem II protein D1 OS=Amborella trichopoda 0.05 OrthoFinder output from all 47 species
AMTR_s00172p00030370 PSBA Photosystem II protein D1 OS=Amborella trichopoda 0.05 OrthoFinder output from all 47 species
AMTR_s00172p00038240 PSBA Photosystem II protein D1 OS=Amborella trichopoda 0.05 OrthoFinder output from all 47 species
AMTR_s00172p00040120 PSBA Photosystem II protein D1 OS=Amborella trichopoda 0.05 OrthoFinder output from all 47 species
AMTR_s00390p00002060 PSBA Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.05 OrthoFinder output from all 47 species
ATCG00020 PSBA photosystem II reaction center protein A 0.16 OrthoFinder output from all 47 species
ATCG00270 PSBD photosystem II reaction center protein D 0.11 OrthoFinder output from all 47 species
Aev_g03797 PSBA component *(PsbA/D1) of PS-II reaction center complex &... 0.26 OrthoFinder output from all 47 species
Aev_g33560 PSBD component *(PsbD/D2) of PS-II reaction center complex &... 0.18 OrthoFinder output from all 47 species
Als_g05104 PSBD component *(PsbD/D2) of PS-II reaction center complex &... 0.07 OrthoFinder output from all 47 species
Als_g08173 PSBA component *(PsbA/D1) of PS-II reaction center complex &... 0.03 OrthoFinder output from all 47 species
Aob_g01728 PSBA component *(PsbA/D1) of PS-II reaction center complex &... 0.08 OrthoFinder output from all 47 species
Azfi_s0192.g057044 No alias not classified & original description: CDS=1-339 0.04 OrthoFinder output from all 47 species
Cba_g05717 PSBA component *(PsbA/D1) of PS-II reaction center complex &... 0.09 OrthoFinder output from all 47 species
Cba_g74869 PSBD component *(PsbD/D2) of PS-II reaction center complex &... 0.09 OrthoFinder output from all 47 species
Ceric.01G054300.1 PSBA, Ceric.01G054300 not classified & original description: pacid=50591444... 0.13 OrthoFinder output from all 47 species
Ceric.03G055000.1 PSBA, Ceric.03G055000 not classified & original description: pacid=50572846... 0.07 OrthoFinder output from all 47 species
Ceric.06G028100.1 PSBA, Ceric.06G028100 not classified & original description: pacid=50620820... 0.29 OrthoFinder output from all 47 species
Ceric.11G046100.1 PSBD, Ceric.11G046100 not classified & original description: pacid=50594971... 0.06 OrthoFinder output from all 47 species
Ceric.12G058600.1 PSBA, Ceric.12G058600 not classified & original description: pacid=50600847... 0.1 OrthoFinder output from all 47 species
Ceric.13G053600.1 PSBA, Ceric.13G053600 not classified & original description: pacid=50635334... 0.12 OrthoFinder output from all 47 species
Ceric.18G054200.1 PSBA, Ceric.18G054200 component *(PsbA/D1) of PS-II reaction center complex &... 0.13 OrthoFinder output from all 47 species
Ceric.1Z022800.1 PSBD, Ceric.1Z022800 component *(PsbD/D2) of PS-II reaction center complex &... 0.14 OrthoFinder output from all 47 species
Ceric.23G039900.1 PSBA, Ceric.23G039900 not classified & original description: pacid=50611232... 0.09 OrthoFinder output from all 47 species
Ceric.34G004800.1 PSBA, Ceric.34G004800 component *(PsbA/D1) of PS-II reaction center complex &... 0.12 OrthoFinder output from all 47 species
Dcu_g24049 PSBA component *(PsbA/D1) of PS-II reaction center complex &... 0.07 OrthoFinder output from all 47 species
Dde_g00539 PSBA component *(PsbA/D1) of PS-II reaction center complex &... 0.1 OrthoFinder output from all 47 species
GSVIVT01010924001 PSBD Photosystem II D2 protein OS=Vitis vinifera 0.09 OrthoFinder output from all 47 species
GSVIVT01016441001 PSBA Photosystem II protein D1 OS=Vitis vinifera 0.05 OrthoFinder output from all 47 species
GSVIVT01029661001 PSBD Photosystem II D2 protein OS=Vitis vinifera 0.06 OrthoFinder output from all 47 species
Gb_03955 PSBA Photosystem II protein D1 OS=Cryptomeria japonica... 0.1 OrthoFinder output from all 47 species
Gb_09035 PSBA Photosystem II protein D1 OS=Cryptomeria japonica... 0.1 OrthoFinder output from all 47 species
Gb_18604 PSBA Photosystem II protein D1 OS=Adiantum capillus-veneris... 0.1 OrthoFinder output from all 47 species
Gb_20129 PSBA Photosystem II protein D1 OS=Zygnema circumcarinatum... 0.05 OrthoFinder output from all 47 species
Gb_23102 PSBA no description available(sp|q85bh5|psba_antag : 432.0) 0.03 OrthoFinder output from all 47 species
Gb_26289 PSBA no description available(sp|q85bh5|psba_antag : 489.0) 0.05 OrthoFinder output from all 47 species
LOC_Os02g24634.1 PSBD, LOC_Os02g24634 component PsbD/D2 of PS-II reaction center complex 0.12 OrthoFinder output from all 47 species
LOC_Os04g16872.1 PSBD, LOC_Os04g16872 component PsbD/D2 of PS-II reaction center complex 0.16 OrthoFinder output from all 47 species
LOC_Os10g21192.1 PSBA, LOC_Os10g21192 component PsbA/D1 of PS-II reaction center complex 0.17 OrthoFinder output from all 47 species
LOC_Os10g39880.1 PSBA, LOC_Os10g39880 Photosystem II protein D1 OS=Oryza sativa subsp. indica... 0.05 OrthoFinder output from all 47 species
LOC_Os12g19580.1 PSBA, LOC_Os12g19580 Photosystem II protein D1 OS=Oryza sativa subsp. indica... 0.2 OrthoFinder output from all 47 species
Len_g50353 PSBD component *(PsbD/D2) of PS-II reaction center complex &... 0.08 OrthoFinder output from all 47 species
Lfl_g02222 PSBA component *(PsbA/D1) of PS-II reaction center complex &... 0.1 OrthoFinder output from all 47 species
Mp1g09910.1 No alias Photosystem II protein D1 OS=Chlorella ellipsoidea... 0.1 OrthoFinder output from all 47 species
Mp3g12650.1 No alias Photosystem II protein D1 OS=Marchantia polymorpha... 0.1 OrthoFinder output from all 47 species
Mp8g01990.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Nbi_g06167 PSBA component *(PsbA/D1) of PS-II reaction center complex &... 0.04 OrthoFinder output from all 47 species
Nbi_g40674 PSBD component *(PsbD/D2) of PS-II reaction center complex &... 0.05 OrthoFinder output from all 47 species
Ore_g00373 PSBA component *(PsbA/D1) of PS-II reaction center complex &... 0.16 OrthoFinder output from all 47 species
Ore_g12399 PSBD component *(PsbD/D2) of PS-II reaction center complex &... 0.17 OrthoFinder output from all 47 species
Pnu_g00529 PSBA component *(PsbA/D1) of PS-II reaction center complex &... 0.07 OrthoFinder output from all 47 species
Pnu_g14362 PSBD component *(PsbD/D2) of PS-II reaction center complex &... 0.06 OrthoFinder output from all 47 species
Ppi_g01211 PSBD component *(PsbD/D2) of PS-II reaction center complex &... 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g001231 PSBD not classified & original description: CDS=1-297 0.12 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002256 PSBC not classified & original description: CDS=1-531 0.12 OrthoFinder output from all 47 species
Sacu_v1.1_s0008.g004175 PSBA not classified & original description: CDS=1-357 0.08 OrthoFinder output from all 47 species
Sacu_v1.1_s0060.g015242 PSBA not classified & original description: CDS=1-252 0.1 OrthoFinder output from all 47 species
Sacu_v1.1_s0116.g021119 PSBA not classified & original description: CDS=1-291 0.08 OrthoFinder output from all 47 species
Sam_g01382 No alias component *(PsbD/D2) of PS-II reaction center complex &... 0.05 OrthoFinder output from all 47 species
Sam_g05154 No alias component *(PsbA/D1) of PS-II reaction center complex &... 0.1 OrthoFinder output from all 47 species
Smo137879 PSBD Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.14 OrthoFinder output from all 47 species
Smo139195 PSBA Photosystem II protein D1 OS=Phalaenopsis aphrodite... 0.16 OrthoFinder output from all 47 species
Smo236852 PSBA Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.15 OrthoFinder output from all 47 species
Solyc00g230080.1.1 PSBD, Solyc00g230080 Photosystem II D2 protein OS=Tupiella akineta... 0.06 OrthoFinder output from all 47 species
Solyc00g500130.1.1 PSBA, Solyc00g500130 component PsbA/D1 of PS-II reaction center complex 0.19 OrthoFinder output from all 47 species
Solyc00g500200.1.1 PSBA, Solyc00g500200 component PsbA/D1 of PS-II reaction center complex 0.19 OrthoFinder output from all 47 species
Solyc00g500296.1.1 PSBA, Solyc00g500296 component PsbA/D1 of PS-II reaction center complex 0.19 OrthoFinder output from all 47 species
Solyc00g500329.1.1 PSBA, Solyc00g500329 component PsbA/D1 of PS-II reaction center complex 0.2 OrthoFinder output from all 47 species
Solyc02g011990.1.1 PSBA, Solyc02g011990 Photosystem II protein D1 OS=Marchantia polymorpha... 0.04 OrthoFinder output from all 47 species
Solyc02g021290.1.1 PSBA, Solyc02g021290 Photosystem II protein D1 OS=Chlorella ellipsoidea... 0.07 OrthoFinder output from all 47 species
Solyc11g030830.1.1 PSBA, Solyc11g030830 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Solyc12g039030.1.1 PSBA, Solyc12g039030 Photosystem II protein D1 OS=Oltmannsiellopsis viridis... 0.09 OrthoFinder output from all 47 species
Spa_g04637 PSBD component *(PsbD/D2) of PS-II reaction center complex &... 0.05 OrthoFinder output from all 47 species
Tin_g01230 PSBD component *(PsbD/D2) of PS-II reaction center complex &... 0.06 OrthoFinder output from all 47 species
Tin_g12149 PSBA component *(PsbA/D1) of PS-II reaction center complex &... 0.14 OrthoFinder output from all 47 species
Zm00001e015953_P001 PSBD, Zm00001e015953 component PsbD/D2 of PS-II reaction center complex 0.04 OrthoFinder output from all 47 species
Zm00001e036844_P001 PSBA, Zm00001e036844 Photosystem II protein D1 OS=Zea mays... 0.03 OrthoFinder output from all 47 species
Zm00001e042043_P001 PSBD, Zm00001e042043 Photosystem II D2 protein OS=Angiopteris evecta... 0.04 OrthoFinder output from all 47 species
Zm00001e042109_P001 PSBD, Zm00001e042109 Photosystem II D2 protein OS=Angiopteris evecta... 0.04 OrthoFinder output from all 47 species
Zm00001e042113_P001 PSBA, Zm00001e042113 Photosystem II protein D1 OS=Zea mays... 0.05 OrthoFinder output from all 47 species
Zm00001e042158_P001 PSBD, Zm00001e042158 Photosystem II D2 protein OS=Angiopteris evecta... 0.04 OrthoFinder output from all 47 species
Zm00001e042173_P001 PSBD, Zm00001e042173 Photosystem II D2 protein OS=Angiopteris evecta... 0.04 OrthoFinder output from all 47 species
Zm00001e042176_P001 PSBA, Zm00001e042176 component PsbA/D1 of PS-II reaction center complex 0.04 OrthoFinder output from all 47 species
Zm00001e042427_P001 PSBD, Zm00001e042427 component PsbD/D2 of PS-II reaction center complex 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0009772 photosynthetic electron transport in photosystem II IEA Interproscan
BP GO:0019684 photosynthesis, light reaction IEA Interproscan
MF GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003954 NADH dehydrogenase activity IEP HCCA
MF GO:0003955 NAD(P)H dehydrogenase (quinone) activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006754 ATP biosynthetic process IEP HCCA
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0015453 oxidoreduction-driven active transmembrane transporter activity IEP HCCA
BP GO:0015986 proton motive force-driven ATP synthesis IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1902600 proton transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR000484 Photo_RC_L/M 44 327
No external refs found!