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  5. Ceric.19G059600.1

Ceric.19G059600.1 (ATRNL, AtRLG1, RNL,...)


Aliases : ATRNL, AtRLG1, RNL, Ceric.19G059600

Description : multifunctional tRNA ligase *(RLG1) & original description: pacid=50575804 polypeptide=Ceric.19G059600.1.p locus=Ceric.19G059600 ID=Ceric.19G059600.1.v2.1 annot-version=v2.1


Gene families : OG0002159 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002159_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.19G059600.1
Cluster HCCA: Cluster_81

Target Alias Description ECC score Gene Family Method Actions
Aev_g07984 ATRNL, AtRLG1, RNL multifunctional tRNA ligase *(RLG1) & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0072.g036985 ATRNL, AtRLG1, RNL multifunctional tRNA ligase *(RLG1) & original... 0.04 OrthoFinder output from all 47 species
Cba_g17689 ATRNL, AtRLG1, RNL multifunctional tRNA ligase *(RLG1) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g03487 ATRNL, AtRLG1, RNL multifunctional tRNA ligase *(RLG1) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g07533 ATRNL, AtRLG1, RNL multifunctional tRNA ligase *(RLG1) & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g12723 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g46854 ATRNL, AtRLG1, RNL multifunctional tRNA ligase *(RLG1) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
MF GO:2001070 starch binding IEP HCCA
InterPro domains Description Start Stop
IPR008906 HATC_C_dom 859 933
No external refs found!