1. Home
  2. Species
  3. Ceratopteris richardii
  4. Sequence
  5. Ceric.19G014000.1

Ceric.19G014000.1 (TAF15b, Ceric.19G014000)


Aliases : TAF15b, Ceric.19G014000

Description : not classified & original description: pacid=50575256 polypeptide=Ceric.19G014000.1.p locus=Ceric.19G014000 ID=Ceric.19G014000.1.v2.1 annot-version=v2.1


Gene families : OG0003283 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003283_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.19G014000.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00153p00073330 TAF15b,... Transcription initiation factor TFIID subunit 15b... 0.04 OrthoFinder output from all 47 species
AT5G58470 TAF15b TBP-associated factor 15B 0.04 OrthoFinder output from all 47 species
Als_g40095 TAF15b not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g07541 TAF15b not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g14874 TAF15b not classified & original description: none 0.04 OrthoFinder output from all 47 species
LOC_Os01g07070.2 TAF15b, LOC_Os01g07070 Transcription initiation factor TFIID subunit 15b... 0.03 OrthoFinder output from all 47 species
Len_g23680 TAF15b not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g06028 TAF15b not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0051.g013936 TAF15b not classified & original description: CDS=120-1466 0.03 OrthoFinder output from all 47 species
Spa_g22431 TAF15b not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e016824_P001 TAF15b, Zm00001e016824 Transcription initiation factor TFIID subunit 15b... 0.03 OrthoFinder output from all 47 species
Zm00001e025837_P001 TAF15b, Zm00001e025837 Transcription initiation factor TFIID subunit 15b... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006368 transcription elongation by RNA polymerase II IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0016570 histone modification IEP HCCA
CC GO:0016593 Cdc73/Paf1 complex IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
CC GO:0035145 exon-exon junction complex IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001876 Znf_RanBP2 69 100
IPR000504 RRM_dom 373 402
No external refs found!