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  5. Ceric.09G059400.1

Ceric.09G059400.1 (FAS4, ATFAS4, Ceric.09G059400)


Aliases : FAS4, ATFAS4, Ceric.09G059400

Description : not classified & original description: pacid=50588370 polypeptide=Ceric.09G059400.1.p locus=Ceric.09G059400 ID=Ceric.09G059400.1.v2.1 annot-version=v2.1


Gene families : OG0005211 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005211_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.09G059400.1
Cluster HCCA: Cluster_142

Target Alias Description ECC score Gene Family Method Actions
AT1G33390 FAS4, ATFAS4 RNA helicase family protein 0.07 OrthoFinder output from all 47 species
Azfi_s0293.g063447 FAS4, ATFAS4 not classified & original description: CDS=109-4221 0.03 OrthoFinder output from all 47 species
Azfi_s1775.g106730 FAS4, ATFAS4 not classified & original description: CDS=1-3846 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000113.111 FAS4, ATFAS4 ATP-dependent RNA helicase DEAH13 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Cre07.g352251 FAS4, ATFAS4 ATP-dependent RNA helicase DEAH13 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Dcu_g09640 FAS4, ATFAS4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g27239 FAS4, ATFAS4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Mp4g04560.1 FAS4, ATFAS4 ATP-dependent RNA helicase DEAH13 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Ppi_g43572 FAS4, ATFAS4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0047.g013416 FAS4, ATFAS4 not classified & original description: CDS=131-4258 0.03 OrthoFinder output from all 47 species
Zm00001e015757_P002 FAS4, ATFAS4,... ATP-dependent RNA helicase DEAH13 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
MF GO:0031369 translation initiation factor binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR007502 Helicase-assoc_dom 796 947
IPR001650 Helicase_C 645 734
IPR011709 DEAD-box_helicase_OB_fold 1034 1122
No external refs found!