1. Home
  2. Species
  3. Ceratopteris richardii
  4. Sequence
  5. Ceric.09G015200.1

Ceric.09G015200.1 (Ceric.09G015200)


Aliases : Ceric.09G015200

Description : RNA splicing regulator *(NSR) & original description: pacid=50587978 polypeptide=Ceric.09G015200.1.p locus=Ceric.09G015200 ID=Ceric.09G015200.1.v2.1 annot-version=v2.1


Gene families : OG0000722 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000722_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.09G015200.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00041p00116460 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.spliceosome-associated... 0.03 OrthoFinder output from all 47 species
Adi_g006726 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g007010 No alias RNA splicing regulator *(NSR) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g16459 No alias RNA splicing regulator *(NSR) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g65770 No alias RNA splicing regulator *(NSR) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g15301 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Gb_18526 No alias NSR RNA splicing regulator 0.08 OrthoFinder output from all 47 species
Len_g14388 No alias RNA splicing regulator *(NSR) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g07293 No alias RNA splicing regulator *(NSR) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g07294 No alias RNA splicing regulator *(NSR) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g02482 No alias RNA splicing regulator *(NSR) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g10153 No alias RNA splicing regulator *(NSR) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g22565 No alias RNA splicing regulator *(NSR) & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c6_29580V3.1 Pp3c6_29580 nucleotide binding;nucleic acid binding 0.01 OrthoFinder output from all 47 species
Solyc03g082710.4.1 Solyc03g082710 NSR RNA splicing regulator 0.05 OrthoFinder output from all 47 species
Spa_g49757 No alias RNA splicing regulator *(NSR) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g14155 No alias RNA splicing regulator *(NSR) & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 196 264
No external refs found!